Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_P10
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 3.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.2
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.6
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.4
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 9.8
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 9.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.8
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 25 9.8
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.8
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 103 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 231
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 258 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 163
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = -2
Query: 357 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 178
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 177 LSASIQASLPSSEIYRQL 124
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -1
Query: 646 PPPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPP 494
PPP + PL P + P PP APS P L ++ VS P
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPP---PPPPRSAPSTGRQPPPLSSSRAVSNP 388
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 468 KLRALLVVIPRILRSPPPTHPLIEDV 391
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 145 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 47
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 333 LVTHKELALKVSSIIGTRVYVFDPSCY 253
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 473 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 387
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 646 PPPDLTSISINPLTPY*KEFAPGLKPP-LSSEAPSAYLTPS 527
PPP + + PL P + A +PP +S +PSA L+PS
Sbjct: 1010 PPPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSA-LSPS 1049
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 643 PPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSS 524
P + + S+NP TP +P + PP+S+ +P P S
Sbjct: 264 PLNYQNSSLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMS 303
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 118 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 219
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,985
Number of Sequences: 5004
Number of extensions: 58460
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -