Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_P06
         (965 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38...    29   4.2  
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553...    28   9.7  

>06_01_0039 -
           386576-387098,387173-387468,387744-388067,388165-388276,
           388355-388482,388914-389048,389122-389250,389620-389787,
           389897-390019,390099-390227,390543-390866,390946-392901
          Length = 1448

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +1

Query: 802 PXXXHPRPRQTXPXXPPXXHXDXXXPXXXAXPXPXAPP 915
           P    P P Q  P  PP  H     P   A P    PP
Sbjct: 36  PPPSRPEPDQAAPPPPPQPHTAPPPPPPNAEPEAPPPP 73


>07_01_0725 -
           5532803-5533324,5533631-5533657,5534285-5534398,
           5534564-5534731,5535951-5536193,5537178-5537261,
           5537357-5538117,5539637-5539730,5540633-5540899,
           5541311-5541316,5542538-5542657
          Length = 801

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -3

Query: 912 GGXGXGGGXXXXRXXIXVXXRGXXGGCLAGAWMXXXG 802
           GG G GG     R       RG  GG   GAW    G
Sbjct: 236 GGGGGGGSVGGSRQGFGAGGRGGGGGGGGGAWNSRPG 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,907,990
Number of Sequences: 37544
Number of extensions: 184156
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)