Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_P02
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.34
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
07_03_0846 - 21983581-21986055 29 3.2
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.2
03_05_0183 - 21681673-21682524 29 4.2
08_02_0042 - 11542707-11542730,11542936-11543011,11543316-115434... 29 5.5
11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042 28 7.3
01_06_0695 - 31292622-31293317 28 7.3
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.7
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 72 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 200
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 340 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 206
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 198 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 347
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 427 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 329
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 640 SQAFIATLLFDPSMSALPIIAKQNSPS 560
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>08_02_0042 -
11542707-11542730,11542936-11543011,11543316-11543425,
11544562-11544747,11545421-11547697
Length = 890
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -1
Query: 734 TAKARPIDPLV*RVFSKRCQKSYHQGITGLWQPSVHSDVAF*SFDVGSSYH--CEAKFAK 561
T RP DPL+ + C+ HQ G+W +++ + + H CE K+ K
Sbjct: 425 TRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMK 484
>11_06_0591 - 25300751-25300918,25301325-25301874,25301954-25302042
Length = 268
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = -2
Query: 469 AIVILLSXERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRE 290
A+++ + E L H L AAGGA+ G +N S S+ G L V
Sbjct: 120 AVLVATNLESCFHLSQLAHPLLLAAGGARGGGGGCVVNISSVAGSV---GMPALAVYSMT 176
Query: 289 SGGSKQ 272
GG Q
Sbjct: 177 KGGMNQ 182
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +3
Query: 24 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 158
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 349 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 176
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 175 TRASR 161
TRA+R
Sbjct: 64 TRAAR 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,262,965
Number of Sequences: 37544
Number of extensions: 479915
Number of successful extensions: 1394
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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