Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_O24
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.89 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 40  SLNRSQHDAALPSTTPRQERKSST 111
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 427 PKLRFLSY*AVLLSQRQAISRVKLTCLTTV*PQLTFPFDGVNNPTLGEFCFAMIGR 594
           P +   S+    L    A+S +K +      PQ+T+  DG   PT G F   MIG+
Sbjct: 421 PPMLLYSFIEQTLQPGPAVS-LKCSAAGNPTPQVTWALDGFALPTNGRF---MIGQ 472


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 427 PKLRFLSY*AVLLSQRQAISRVKLTCLTTV*PQLTFPFDGVNNPTLGEFCFAMIGR 594
           P +   S+    L    A+S +K +      PQ+T+  DG   PT G F   MIG+
Sbjct: 421 PPMLLYSFIEQTLQPGPAVS-LKCSAAGNPTPQVTWALDGFALPTNGRF---MIGQ 472


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 686 EVARKVTTRDNWLVAAKRS*ATLLFDPSMSALPIIAKQNSPSV 558
           EV+ K     NW+   +     +L+DP M   P + K  + +V
Sbjct: 63  EVSEKYGILQNWMDKFRGEEIAILYDPGM--FPALLKDPNGNV 103


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 413 ALGRAAGGAKLPSAGLCLNASKAEASL 333
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 413 ALGRAAGGAKLPSAGLCLNASKAEASL 333
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 413 ALGRAAGGAKLPSAGLCLNASKAEASL 333
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 413 ALGRAAGGAKLPSAGLCLNASKAEASL 333
           ALGR AGG    S+ L L+ +   +SL
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 387 RTTGRSAECMNQMSETAVPLVLSS 458
           +  G+  +C N MSE  V ++L +
Sbjct: 170 KENGKEFDCHNYMSELTVDILLET 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,935
Number of Sequences: 438
Number of extensions: 4676
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)