Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_O23
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 187 2e-48
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 32 0.12
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 1.1
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 28 1.4
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 2.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 3.3
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 27 3.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 4.3
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 5.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.7
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 7.6
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 187 bits (455), Expect = 2e-48
Identities = 82/148 (55%), Positives = 118/148 (79%), Gaps = 1/148 (0%)
Frame = -3
Query: 687 YETHKDETYXRRVIKPLXAS*LLTKGYLSK-TAL*CCXYGAKVLLPGILRYEDGIEVDQE 511
Y+ +DE+Y RRVI+PL + + K + K +A+ YGAK+++PG+LRYE GIEV++E
Sbjct: 248 YDNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEE 307
Query: 510 IVIVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKIL 331
IV++TTKGEA+A+ +A M+T +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK L
Sbjct: 308 IVLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTL 367
Query: 330 IQQGKLDKYGKPNENTPKEWLNSYVNYN 247
++GKLDKYG+PNENTP +W SY++Y+
Sbjct: 368 KKEGKLDKYGRPNENTPADWSKSYIDYS 395
Score = 56.0 bits (129), Expect = 6e-09
Identities = 29/66 (43%), Positives = 36/66 (54%)
Frame = -2
Query: 784 GQMIEXRRXRSGIQGEKEGXVTMHDILDAPWXV*NPQRRDLXSSSNQTSGXLLIAHKRIF 605
G M E RR RSG E + VTMHD+LDA W N + + LL+ +KRI
Sbjct: 216 GHMQELRRVRSGCLSENDDIVTMHDVLDAQWIYDNTRDESYLRRVIRPLESLLVGYKRIV 275
Query: 604 IKDSAV 587
+KDSAV
Sbjct: 276 VKDSAV 281
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 31.9 bits (69), Expect = 0.12
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = -3
Query: 318 KLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 139
K D E++ +E +S + + ++E E+ + E +K+ + A +ED + E +
Sbjct: 32 KQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKK--AVAASEDSESDSESSE 89
Query: 138 EXXXXXXKRDSEAPAEADATMDT---SESPETAEQPADDSVR 22
E + DSE E+++ ++ SE +E+ +D+S R
Sbjct: 90 EEEETESEEDSEVSDESESESESESESEEESESEEESDESER 131
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -3
Query: 231 ENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 52
E + VE+ K+ S+ ++ D + S + E DSE+ + ++ P +
Sbjct: 186 EEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245
Query: 51 AEQPA 37
E+PA
Sbjct: 246 EERPA 250
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -3
Query: 330 IQQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 196
I QG+LD + KP ++PK+ +++ + K++ ++ G E ++
Sbjct: 336 IPQGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 282 PKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 139
PK + N+ N+KK +GD + R A+ A+A D +V KQ
Sbjct: 275 PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEVDNIEKQ 322
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 3.3
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 386 SRSIMTRLSFAATP*SH-EAIVDVVIRATANATASPLVVTITISWSTSMPS--SYLKIPG 556
S +T +S +T ++ + VD+ TA++T T+S+ST +P+ S L P
Sbjct: 213 SSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPA 272
Query: 557 NST 565
+S+
Sbjct: 273 SSS 275
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 613 FCEQSGGXQRFDYSTXISLVFVGFIRXMVHLG 708
F G QR D+ T L F+GFI+ + LG
Sbjct: 138 FLGSFGNSQRIDFGTGHELNFLGFIKGLDLLG 169
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 512 SWSTSMPSSYLKIPGNSTLAPXQQHYSAVFDKYPFVSNQEASRGLIT 652
S STS+PS+ + + NST+ YS+ +P+ ++ S G T
Sbjct: 144 SASTSIPSTAITVTANSTI------YSSATSSFPYSTDVSVSTGTST 184
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.7
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Frame = -3
Query: 315 LDKYGKP--NENTPKEWLNSYVNYNV-------KKEPENGDGVEEGSRKRTASTANAEDP 163
+D+YG+P + KE Y N E + + V S K T S ++
Sbjct: 65 VDRYGRPLNQDKATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEE 124
Query: 162 DVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAE 46
EV SE+ E+DA +T PE +E
Sbjct: 125 SEDEEVYDPARGEGIISTSESSDESDAESETEAQPEISE 163
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 5.7
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +2
Query: 386 SRSIMTRLSFAATP*SHEAIVDVVIRATANATASPLVVTITISWSTSMPSSYLKIPGNST 565
S S + +S +++ S I +++++++SP + TIS S+S SS+ +ST
Sbjct: 266 SSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSF-----SST 320
Query: 566 LAPXQQHYSAVFDKYPFVSNQEAS 637
L+ S+ F P S+ S
Sbjct: 321 LSSSSMSSSSSFSSSPTSSSSTIS 344
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = -3
Query: 240 KEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADA----TMD 73
KE E DG+++ S + + + E P+ ++++EA E A +
Sbjct: 282 KESETIDGIDDKSLRSSTREVSVESPNEDSVNDDSSSDVSDEKETEAKHEIRAPAIIVRE 341
Query: 72 TSESPETAEQPADDS 28
TS P TA +D+
Sbjct: 342 TSSHPSTAVPSENDT 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,757
Number of Sequences: 5004
Number of extensions: 57278
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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