Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_O19
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.43 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.0  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 536 PPPPRXXXXXPRXTPXPXPXXXXXAGXXSPPP 631
           PPPP      P   P P P      G   PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/39 (30%), Positives = 13/39 (33%)
 Frame = +2

Query: 530 RXPPPPRXXXXXPRXTPXPXPXXXXXAGXXSPPPXXSAP 646
           + PPPP      P   P P P          PPP    P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +2

Query: 626  PPXXSAPXXXXXXXXXXXPXXXXXXPXXPXRXPPPP 733
            PP  SAP           P      P  P   PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 329 LRSLISNLSNTCDLTPLPEWSCEQSAW 249
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/66 (27%), Positives = 19/66 (28%)
 Frame = +2

Query: 536 PPPPRXXXXXPRXTPXPXPXXXXXAGXXSPPPXXSAPXXXXXXXXXXXPXXXXXXPXXPX 715
           PP P      P   P P P          PPP   A            P      P  P 
Sbjct: 144 PPRPSIPPPSPASAP-PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAV---PPMPP 199

Query: 716 RXPPPP 733
           + PPPP
Sbjct: 200 KVPPPP 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,411,344
Number of Sequences: 5004
Number of extensions: 15998
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)