Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_O14
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    28   1.3  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   4.0  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   7.0  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.2  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.2  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = -2

Query: 239 AASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRR 60
           A S D+P  +SPGS D+     R    R    +S   PP+  +T T  L++    +A   
Sbjct: 203 AKSDDSPVVKSPGSNDKPSASPRISV-RSLGNSSVVRPPTRTST-TRPLSRVNVTNASGS 260

Query: 59  LKHSSTPLNPSR 24
           +  +ST  +PS+
Sbjct: 261 ISKNST--SPSK 270


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 604 PGTTIELTCEAAGSPAPSVHWFKNDSP 524
           PG T + TC   GS   +V++ KN  P
Sbjct: 427 PGCTYDNTCSQRGSVIANVYFAKNKQP 453


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -3

Query: 766 RRXWXXASPPX*INTXSCFRTXDNSI-ENGVQAKSDDLINXYXSRQGPLPSYAHT 605
           +R +   S P  I++ +   T  N+I E     K+D   N Y S    LPSY HT
Sbjct: 240 KRTYSARSIPSNISSTNVATTPSNTIFEMDDTLKADSSSNEYHSPTNTLPSY-HT 293


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 128 PPSSGATWTSTLAKPKTLSARRRLKHSSTPLN 33
           P  S   W +TL KP+++    R    S+P+N
Sbjct: 885 PHWSEHIWLTTLKKPQSIHVSGRFPQVSSPVN 916


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 278 GAIGDHDARLQREQLSAFRELSSAIC 355
           GAI  HD R+   Q+   +  SS +C
Sbjct: 283 GAIHHHDVRIANHQIGTLQGHSSEVC 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,589
Number of Sequences: 5004
Number of extensions: 52378
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)