Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_O12
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    28   0.12 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   8.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -3

Query: 737 VRQXPNDMQTXTFKFGXRMHNSDEMDFVI--DKRIYSM---FESGAWDVTDL 597
           V   P D QT   KFG    N D++   +  +K    +   ++SG WD+ ++
Sbjct: 155 VTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIINV 206


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 325 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 227
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 725 PNDMQTXTFKFGXRMHNSDEMDFVIDKRIYSM 630
           P D       FG  +H+ +E++  +DK+ + M
Sbjct: 177 PYDTHRCRINFGSWVHSGEEVNIFLDKKGFHM 208


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 598 CPVRCRARTVARWKLAWQCS 539
           C VRC A +  RW   W+ S
Sbjct: 19  CSVRCSAASGLRWFEIWRDS 38


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 446 LAARHWTTTSCGFSVH 399
           LAAR  T++SC +  H
Sbjct: 331 LAAREITSSSCSYMAH 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,219
Number of Sequences: 438
Number of extensions: 2475
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)