Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_O10
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 130 2e-31
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 126 4e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 34 0.028
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.45
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.8
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.6
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 26 7.4
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 130 bits (314), Expect = 2e-31
Identities = 66/113 (58%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Frame = -1
Query: 693 GXTXIAGRFTPGXLLTR-SKLHSVNLSLDCIDPAQDHQPITEASYVNIPVIALCNTDSPL 517
G T IAGRFTPG ++ + + DP D Q I EAS+VNIPVIALC+TDS L
Sbjct: 97 GATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSIL 156
Query: 516 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 358
VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYRDP
Sbjct: 157 NHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3
Query: 748 IXSRPFGQRXVLKFXAHTRXYAYCGTFHTRXFTNQIQAAFRE 623
+ +R +G R VLKF AHT A G F FTN I +RE
Sbjct: 79 VSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE 120
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 126 bits (304), Expect = 4e-30
Identities = 64/113 (56%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Frame = -1
Query: 693 GXTXIAGRFTPGXLLTR-SKLHSVNLSLDCIDPAQDHQPITEASYVNIPVIALCNTDSPL 517
G T IAGRFTPG ++ + + DP D Q I EAS+VNIPVIALC+TDS L
Sbjct: 98 GATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSIL 157
Query: 516 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 358
VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FYRDP
Sbjct: 158 NHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/42 (52%), Positives = 24/42 (57%)
Frame = -3
Query: 748 IXSRPFGQRXVLKFXAHTRXYAYCGTFHTRXFTNQIQAAFRE 623
I SRP+G R VLKF AHT A G F FTN I +RE
Sbjct: 80 ISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE 121
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 33.9 bits (74), Expect = 0.028
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 606 IDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 439
++P ++ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 186 LNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.45
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 353 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 472
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 576 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 466
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 422 VVCFPVTSAGMLWLICSSTVTPEESEKD 339
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 654 LLTRSKLHSVNLSLDCIDPAQDHQPITEASYVNIPVIA 541
LL + +S+N SLD +D D + E ++ P +A
Sbjct: 136 LLQSTNENSINASLDVLDELVDESLVEEQFFIIAPQLA 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,103
Number of Sequences: 5004
Number of extensions: 50769
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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