Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_O09
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 91 1e-19
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 83 3e-17
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 27 3.0
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 27 3.9
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 27 3.9
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 27 3.9
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.2
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 5.2
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 25 9.0
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 25 9.0
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 9.0
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 9.0
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 91.5 bits (217), Expect = 1e-19
Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Frame = -1
Query: 491 KMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMA 312
K+ ++ +++++ P L + +IP P N +GKA Y+ SEN I WKI R
Sbjct: 313 KIIYRISIRADY-PHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFL 371
Query: 311 GMKETQLSAEIELLETDTKKKWTRPPISMGFEV-PFAPSGFKVRYLKVFEPKLNYSDHDV 135
G E AE+EL T ++ W +PPIS+ F + F SG V+YL+V EP + S +
Sbjct: 372 GETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLRVSEP--SNSKYKS 429
Query: 134 IKWVRYIGRSG 102
IKWVRY R+G
Sbjct: 430 IKWVRYSTRAG 440
Score = 56.0 bits (129), Expect = 6e-09
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = -2
Query: 670 VVIDDCQFHQCVKLSKFETEHSISFIPPDRRV 575
V+++DCQFHQCV+L +FE EH I+FIPPD V
Sbjct: 254 VILEDCQFHQCVRLPEFENEHRITFIPPDGEV 285
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/29 (44%), Positives = 24/29 (82%)
Frame = -3
Query: 582 GEFELMRYRTTKDISLPFRVIPLVREVGR 496
GE ELM YR+ ++I++PFR++P+V ++ +
Sbjct: 283 GEVELMSYRSHENINIPFRIVPIVEQLSK 311
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 83.4 bits (197), Expect = 3e-17
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = -1
Query: 491 KMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMA 312
++E V K+ FK + +++ IP P + + G +Y + A+VW IK+ A
Sbjct: 290 RIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFA 349
Query: 311 GMKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDH 141
G KE + AE+ L ++ + + + P+ + F +P F SG +VRYLK+ EPKLNY
Sbjct: 350 GGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNY--- 406
Query: 140 DVIKWVRYIGRSG 102
+ WVRY+ ++G
Sbjct: 407 HAMPWVRYVTQNG 419
Score = 46.0 bits (104), Expect = 6e-06
Identities = 17/29 (58%), Positives = 25/29 (86%)
Frame = -2
Query: 670 VVIDDCQFHQCVKLSKFETEHSISFIPPD 584
V ++D +FHQCV+L++FE + +ISFIPPD
Sbjct: 231 VEMEDVKFHQCVRLARFENDRTISFIPPD 259
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 323 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 180
K++ + TQ+ +ELL T T+++W P + + S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 452 PSLLGQKIEVKIPTPLNTSGVQLICLK 372
PS+L IE + T +G+Q+IC+K
Sbjct: 242 PSILSSSIETFLRTLKRETGLQVICIK 268
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 606 PSPSYHRTGEFELMRYRTTKD 544
PSPS++R+G + R TTKD
Sbjct: 111 PSPSFYRSGSQKRARNLTTKD 131
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -3
Query: 591 HRTGEFELMRYRTTKDISLPFRVI----PLVREVGRTQDGSQGCAEE*LQALPARTEDRS 424
HR EF+++ Y KD +P +I ++ E R + Q +E + A + RS
Sbjct: 268 HRAKEFQIIIYEKKKDFDIPIALILIPTTIIAEELRRKRNIQEMSETSWKPSIAESASRS 327
Query: 423 EDSNS 409
++ S
Sbjct: 328 DEKGS 332
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 394 PLVFSGVGIFTSIFCPSREGLKLLF 468
P+V SG G+ ++CP++ G L+F
Sbjct: 162 PVVSSG-GVMADLWCPAQRGTALIF 185
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 215 VPFAPSGFKVRYLKVFEPKLNYSDHDVIKW 126
VP+ + + YLK+F K N S D+ +W
Sbjct: 206 VPYFSTAWFQFYLKLFSQKDNVSSSDLTRW 235
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 138 VMVRVIQFRFKHLQIADLESGGCKGNFEP 224
+ R++ R H I +E CK +EP
Sbjct: 53 IFARILDARAGHFSITPIEQTSCKQMYEP 81
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -1
Query: 416 PTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT 258
P L+ + VQL+ L + Y ASEN + K +R+A + A+ +L + T
Sbjct: 229 PKKLSANDVQLLVLAIQKFYNASENTPLGK-ERLALLAAFSKGADFDLHKVAT 280
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 614 SFELAQLHALVELTVVNDHYWLPERAG-SLSVLP 712
SF+ A+L ++ V +++ W+P++ G SL + P
Sbjct: 119 SFDPAELAEIIRKFVAHENRWVPDQRGYSLYIRP 152
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 132 DDVMVRVIQFRFKHLQIADLESGGCKGNFEPHGD 233
DD ++ +I+ +F+HL + + GG G+ GD
Sbjct: 149 DDALLLMIEHKFRHLPV--VSDGGPDGSAGDEGD 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,062
Number of Sequences: 5004
Number of extensions: 63528
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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