Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_O09
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    27   0.25 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.34 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.1  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 602 DGMFSFELAQLHALVELTVVNDHYWLPE 685
           D  F ++ A+   + EL V ++H WLP+
Sbjct: 79  DHKFQWDPAEYGGVTELYVPSEHIWLPD 106


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 223 GSKFPLHPPDSRSAI*RCLNRN*ITRTMTSSSGCATS 113
           GS+ PLHPP S +++   +     T T T+++  AT+
Sbjct: 90  GSR-PLHPPASSTSLPATITTTTTTTTTTTATAAATA 125


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 321 FDLPHDSVLRGFILRFPLQANQLHP 395
           FD   D+ LRG ++R   QANQ  P
Sbjct: 555 FDPEEDAPLRGDLVRILKQANQSVP 579


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 212 PFAPSGFKVRYLKVFEPKLNYSDHDVIKW 126
           PF PSG  ++ +     +LN+   D+ +W
Sbjct: 285 PFRPSGTVLKDINRQVDELNFDIQDLERW 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,575
Number of Sequences: 438
Number of extensions: 4511
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)