Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_O08
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.15 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    27   0.20 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    27   0.20 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.34 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.79 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   7.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 271 PTGRRGDSRRPTTSVSAVRRPYQAARAMPLVFRDTPLGQNQPA 399
           PT R     +P      ++RP   A + P  F   PLG  +PA
Sbjct: 289 PTYRMQQVEQPVQVYIQLKRPSDGATSEPFPFLMLPLGAGRPA 331


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 65  AGYVRLNDLQVLRADRGPKEFRAH--PLNDSPXTLTPGVRSPSGVKTRSE*GGSRGQHYN 238
           +GY ++  LQVL A   P++F  +   L+D   TL PG+R+PS   T     G+   HY 
Sbjct: 81  SGYDKI--LQVLGAT--PRDFLQNLDALHDHLGTLYPGMRAPSFRCTERPEDGALILHYY 136

Query: 239 QTR 247
             R
Sbjct: 137 SDR 139


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +2

Query: 65  AGYVRLNDLQVLRADRGPKEFRAH--PLNDSPXTLTPGVRSPSGVKTRSE*GGSRGQHYN 238
           +GY ++  LQVL A   P++F  +   L+D   TL PG+R+PS   T     G+   HY 
Sbjct: 81  SGYDKI--LQVLGAT--PRDFLQNLDALHDHLGTLYPGMRAPSFRCTERPEDGALILHYY 136

Query: 239 QTR 247
             R
Sbjct: 137 SDR 139


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 271 PTGRRGDSRRPTTSVSAVRRPYQAARAMPLVFRDTPLGQNQPAGSER 411
           PT R     +P      ++RP   A + P  F   PLG + P    R
Sbjct: 289 PTYRMQQVEQPVQVYIQLKRPSDGATSEPFPFLMLPLGADDPDSLRR 335


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 315 LRGTAALPGRPGDAAGVPGYPAGPEPACRVGTRY 416
           +R T  +PG      GV G P     A  V  RY
Sbjct: 528 IRSTDVIPGTQEHVCGVKGIPCSWGRAINVANRY 561


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 91  QIVESHIPRAPP 56
           Q+  SHIP APP
Sbjct: 97  QVQGSHIPTAPP 108


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 363 VPGYPAGPEPACRVGTRY 416
           VP +  G     RVGTRY
Sbjct: 352 VPNWVMGNHDRVRVGTRY 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,964
Number of Sequences: 438
Number of extensions: 4613
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)