Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_O06
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.072
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.38
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.67
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.67
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.0
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 4.7
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 6.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.072
Identities = 26/113 (23%), Positives = 27/113 (23%), Gaps = 3/113 (2%)
Frame = +2
Query: 560 PXPXXXXXXXPXPXXXXPXXXXXXXXPXXXXPXXPXPXXPPRPXXXXXXXPXXXPXXPRP 739
P P P P P P P P P P P P+P
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Query: 740 XXXXXXXXXPPXPTXXPXXPXPPXXXXXXXPXPPPXXXXXXP---XXXPPXXP 889
PP P P P P PPP P PP P
Sbjct: 1165 SVAA-----PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 29.1 bits (62), Expect = 0.88
Identities = 18/73 (24%), Positives = 18/73 (24%)
Frame = +1
Query: 589 PXPXPXXXXPXXXAXXXXTXXPPXPPPXXTSPPXXXXXXXPXXXPXXPXXXXXXXXXXXP 768
P P P P PP PPP P P P P
Sbjct: 1170 PVPAPSSGIPP--VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Query: 769 PXPYXXXXXPPXP 807
P P PP P
Sbjct: 1228 PVPVPTAKAPPVP 1240
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/91 (24%), Positives = 22/91 (24%), Gaps = 1/91 (1%)
Frame = +2
Query: 596 PXXXXPXXXXXXXXPXXXXPXXPXPXX-PPRPXXXXXXXPXXXPXXPRPXXXXXXXXXPP 772
P P P P P P PP P P P P PP
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 773 XPTXXPXXPXPPXXXXXXXPXPPPXXXXXXP 865
P P P P PPP P
Sbjct: 1191 VPPPSEAPPV-PKPSVGVPPVPPPSTAPPVP 1220
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/100 (23%), Positives = 24/100 (24%), Gaps = 5/100 (5%)
Frame = +2
Query: 560 PXPXXXXXXXPXPXXXXPXXXXXXXXPXXXXPXXPXPXXP-PRPXXXXXXXPXXXPXXPR 736
P P P P P P P P P P P P P+
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202
Query: 737 PXXXXXXXXXP----PXPTXXPXXPXPPXXXXXXXPXPPP 844
P P P PT P P P P P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 26.2 bits (55), Expect = 6.2
Identities = 21/90 (23%), Positives = 23/90 (25%)
Frame = +1
Query: 589 PXPXPXXXXPXXXAXXXXTXXPPXPPPXXTSPPXXXXXXXPXXXPXXPXXXXXXXXXXXP 768
P P P P + + P PPP P P P P
Sbjct: 1042 PVPIPTSTPPVPKSS---SGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI------P 1092
Query: 769 PXPYXXXXXPPXPXXXXXXXXXPPPXXXPP 858
P P PP P P P PP
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/85 (22%), Positives = 19/85 (22%), Gaps = 1/85 (1%)
Frame = +2
Query: 638 PXXXXPXXPXPXXPPRPXXXXXXXPXXXPXXPRPXXXXXXXXXPPXPTXXPXXPXP-PXX 814
P P P P P P P P PP P P P P
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSV 1128
Query: 815 XXXXXPXPPPXXXXXXPXXXPPXXP 889
P P P P P
Sbjct: 1129 AAPPVPVPSGAPPVPKPSVAAPPVP 1153
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +2
Query: 770 PXPTXXPXXPXPPXXXXXXXPXPPPXXXXXXPXXXPPXXP 889
P P P P P P PPP P PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +1
Query: 766 PPXPYXXXXXPPXPXXXXXXXXXPPPXXXPP 858
PP P PP P PPP PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = +2
Query: 770 PXPTXXPXXPXPPXXXXXXXPXPPPXXXXXXPXXXPPXXP 889
P P P PP P PPP PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -1
Query: 334 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 236
R+PPP +RS+ L D+TP+ +W ++S W
Sbjct: 99 RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.67
Identities = 20/84 (23%), Positives = 20/84 (23%)
Frame = +2
Query: 590 PXPXXXXPXXXXXXXXPXXXXPXXPXPXXPPRPXXXXXXXPXXXPXXPRPXXXXXXXXXP 769
P P P P P P P P P P P P
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP-PSLPMGAPAAP 447
Query: 770 PXPTXXPXXPXPPXXXXXXXPXPP 841
P P P P P P PP
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 29.1 bits (62), Expect = 0.88
Identities = 21/79 (26%), Positives = 22/79 (27%)
Frame = +1
Query: 643 TXXPPXPPPXXTSPPXXXXXXXPXXXPXXPXXXXXXXXXXXPPXPYXXXXXPPXPXXXXX 822
T PP P P + PP P P P PP P PP P
Sbjct: 412 TSTPPVPTPP-SLPPSAPPSLPPSAPPSLPMGAPAA-----PPLPPSAPIAPPLPAGMPA 465
Query: 823 XXXXPPPXXXPPXXXXXPP 879
PP PP P
Sbjct: 466 APPLPPAAPAPPPAPAPAP 484
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/85 (27%), Positives = 23/85 (27%)
Frame = -2
Query: 843 GGGXGXXXXXXXGGXGXXGXXVGXGGXXXXXXXXXGRGXXGXXXGXXXXXXXGRGGXXGX 664
GGG G G G G GG G G G G G GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG--GP 244
Query: 663 GXXGXXXXGXXXXXXXXGXXXXGXG 589
G G G G G G
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHG 269
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/64 (25%), Positives = 16/64 (25%)
Frame = +2
Query: 653 PXXPXPXXPPRPXXXXXXXPXXXPXXPRPXXXXXXXXXPPXPTXXPXXPXPPXXXXXXXP 832
P P P RP P P PP P P P PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Query: 833 XPPP 844
P P
Sbjct: 1743 VPNP 1746
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/58 (29%), Positives = 17/58 (29%)
Frame = -2
Query: 840 GGXGXXXXXXXGGXGXXGXXVGXGGXXXXXXXXXGRGXXGXXXGXXXXXXXGRGGXXG 667
GG GG G G G GRG G G GRGG G
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 349 VQXCRRAPPPPLRSLISNLSNTCDLTPLPEW 257
VQ P P+ S ++N +L PLPEW
Sbjct: 2 VQTAALHGPKPMDSSHIKVTNVKELKPLPEW 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,425
Number of Sequences: 5004
Number of extensions: 19916
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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