Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_O03
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.28 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.28 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.48 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.64 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.64 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.4  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   3.4  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   7.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/39 (43%), Positives = 17/39 (43%)
 Frame = -2

Query: 810 GGGXGGXIXXGXSXEGGXGXXGWGXGGFXDXNXPGXTGG 694
           GGG GG         GG G  G G GGF     PG  GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGF--GGGPGGFGG 263



 Score = 29.1 bits (62), Expect = 0.84
 Identities = 21/52 (40%), Positives = 21/52 (40%)
 Frame = -2

Query: 849 GRGGXXXXXGXLVGGGXGGXIXXGXSXEGGXGXXGWGXGGFXDXNXPGXTGG 694
           G GG     G    GG GG    G    GG G  G G GGF     PG  GG
Sbjct: 196 GSGGPPPGPGGF--GGFGGFGGEGHH-HGGHGGFGGGPGGF--EGGPGGFGG 242



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 807 GGXGGXIXXGXSXEGGXGXXGWGXGGF 727
           GG GG        EGG G  G G GGF
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGF 247


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = +2

Query: 695 PPVXPGXLXSXNPPXPQPXXPXPPSXLXPXXIXPPXPPPTXXPXXXXXPPRP 850
           PP  P  +     P P P  P  P    P    PP PPP         PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGP----PPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +2

Query: 698 PVXPGXLXSXNPPXPQPXXPXPPSXLXPXXIXPPXPPP 811
           PV P       PP P P    PP         PP PPP
Sbjct: 750 PVPPPAPIMGGPPPPPP----PPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 707  PGXLXSXNPPXPQPXXPXPPSXLXPXXIXPPXPPPTXXP 823
            P  + +  PP P    P PPS   P    PP  PP   P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPS-APPMPAGPPSAPPPPLP 1736



 Score = 29.1 bits (62), Expect = 0.84
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +2

Query: 698  PVXPGXLXSXNPPXPQPXXPXPPSXLXPXXIXPPXPPPTXXPXXXXXPP 844
            P  PG + +   P   P  P P S L P    P  P P+  P     PP
Sbjct: 1460 PKAPGMVTNAPAPSSAPAPPAPVSQLPP--AVPNVPVPSMIPSVAQQPP 1506


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -3

Query: 338 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
 Frame = +2

Query: 695 PPVXPGXLXSXNPPXPQPXXPXPPSX--LXPXX-IXPPXPPPTXXPXXXXXPP 844
           PP+  G   S  PP P P          L P     PP PPP   P     PP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = +2

Query: 695 PPVXPGXLXSXNPPXPQPXXPXPPSXLXPXX---IXPPXPPPT 814
           PP+ P    + + P   P  P  P  + P       PP PPP+
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPS 296


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 734 PXPQPXXPXPPSXLXPXXIXPPXPPP 811
           P   P  P PP    P    PP PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 731 PPXPQPXXPXPPSXLXPXXIXPPXPP 808
           PP   P  P PP    P    PP PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 773 LXPXXIXPPXPPPTXXPXXXXXPPRP 850
           L P    PP PPP   P     PP P
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 731 PPXPQPXXPXPPSXLXPXXIXPPXPPPTXXPXXXXXPPRP 850
           PP PQ     PP+   P    PP  P +  P     PP P
Sbjct: 130 PPTPQSEL-RPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 23/77 (29%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
 Frame = +2

Query: 617 PPXXCRPXXSXLRXXXXXXXPXGXXXPPVXPGXLXSXNPPXPQPXXP--XPPSXLXPXXI 790
           PP    P  S          P     PP+ P  L    PP  QP  P   PPS       
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPI-PSSL----PPPAQPAAPVKSPPSAPSLPSA 193

Query: 791 XPPXPPPTXXPXXXXXP 841
            PP PP    P     P
Sbjct: 194 VPPMPPKVPPPPLSQAP 210



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/87 (24%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
 Frame = +2

Query: 593 GXNTGRXEPPXXCRPXXSXLRXXXXXXXPXGXXXPPVXPGXLXSXNPPXPQPXXPXPPSX 772
           G ++    PP    P             P     PP  P    +  PP P    P P S 
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSP----ASAPPIPSKAPPIPSSL 171

Query: 773 LXP-XXIXPPXPPPTXXPXXXXXPPRP 850
             P     P   PP+        PP P
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMP 198


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -2

Query: 849 GRGGXXXXXGXLVGGGXGGXIXXGXSXEGGXGXXGWGXGG 730
           GRGG     G   GGG GG         G  G  G   GG
Sbjct: 24  GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/41 (41%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -2

Query: 849 GRGGXXXXXGXLVGGGXGGXIXXGXSX-EGGXGXXGWGXGG 730
           GRGG     G   GGG GG    G     GG G  G   GG
Sbjct: 17  GRGGFNGGRGGF-GGGRGGARGGGRGGARGGRGGRGGARGG 56


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 707  PGXLXSXNPPXPQPXXPXPPSXLXPXXIXPPXPPPTXXP 823
            P    S  PP P+P    PP    P    PP P P+  P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVP-KPSVAVPPVPAPSGAP 1121



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 695  PPVXPGXLXSXNPPXPQPXXPXPPSXLXPXXIXPPXPPPT 814
            PPV P    S  PP P P    PP  + P    PP P P+
Sbjct: 1208 PPVPP---PSTAPPVPTPSAGLPPVPV-PTAKAPPVPAPS 1243



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +2

Query: 695  PPVXPGXLXSXNPPXPQPXXPXPPSXLXPXXIXPPXPPPTXXP 823
            PPV    L S  PP P P    PP  +      PP P PT  P
Sbjct: 1012 PPVPK--LSSKAPPVPLPSADAPP--IPVPSTAPPVPIPTSTP 1050



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
 Frame = +2

Query: 677  PXGXXXPPVXPGXLXSXNPPXPQPXXPXP-PSXLXPXXIXPPXPPPTXXPXXXXXP-PRP 850
            P     PPV    + +   P P    P P PS   P    P   PP   P     P P P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
 Frame = +2

Query: 701  VXPGXLXSXNPPXPQPXXPXPPSXLXPXXIXPPXP----PPTXXPXXXXXPPRP 850
            V P    S  PP P+P    PP  +       P P    PP   P      P+P
Sbjct: 1111 VPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
 Frame = +2

Query: 707  PGXLXSXNPPXPQPXXPXPPSXLXPXXIXP-PXP----PPTXXPXXXXXPPRP 850
            P    S  PP P+P    PP       I P P P    PP   P      P+P
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 731 PPXPQPXXPXPPSXLXPXXIXPPXPPP 811
           PP  QP     P+   P    PP PPP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPP 194


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = -2

Query: 849 GRGGXXXXXGXLVGGGXGGXIXXGXSXEGGXGXXGWGXGGFXDXNXPGXTG 697
           GRGG     G    GG GG    G     G G  G   GGF   +  G  G
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGF----GGGSRGGSRGGFRGGSRGGFRG 192


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 329 PPPLRSLISNLSNTCDLTPLPEW 261
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,444
Number of Sequences: 5004
Number of extensions: 21472
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)