Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_N19
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 73 3e-14
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 56 7e-09
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 30 0.31
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 27 2.9
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 27 2.9
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 27 3.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.0
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 26 6.7
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 25 8.8
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 73.3 bits (172), Expect = 3e-14
Identities = 28/52 (53%), Positives = 43/52 (82%)
Frame = -1
Query: 642 QCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKM 487
QCV+L +FE EH I+FIPPDGE ELM YR+ ++I++PFR++P+V ++ + K+
Sbjct: 263 QCVRLPEFENEHRITFIPPDGEVELMSYRSHENINIPFRIVPIVEQLSKQKI 314
Score = 70.1 bits (164), Expect = 3e-13
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Frame = -2
Query: 485 KXKVVLKSNFK---PSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRM 315
K K++ + + + P L + +IP P N +GKA Y+ SEN I WKI R
Sbjct: 311 KQKIIYRISIRADYPHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRF 370
Query: 314 AGMKETQLSAEIELLETDTKKKWTRPPISMGFEV-PFAPSGFKVRY 180
G E AE+EL T ++ W +PPIS+ F + F SG V+Y
Sbjct: 371 LGETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQY 416
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 178 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 86
L+V EP + S + IKWVRY R+G E R
Sbjct: 417 LRVSEP--SNSKYKSIKWVRYSTRAGTCEIR 445
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 55.6 bits (128), Expect = 7e-09
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Frame = -2
Query: 491 RWKXKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMA 312
R + V K+ FK + +++ IP P + + G +Y + A+VW IK+ A
Sbjct: 290 RIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFA 349
Query: 311 GMKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRY 180
G KE + AE+ L ++ + + + P+ + F +P F SG +VRY
Sbjct: 350 GGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRY 396
Score = 53.2 bits (122), Expect = 4e-08
Identities = 20/34 (58%), Positives = 29/34 (85%)
Frame = -1
Query: 642 QCVKLSKFETEHSISFIPPDGEFELMRYRTTKDI 541
QCV+L++FE + +ISFIPPDGEF+LM YR + ++
Sbjct: 240 QCVRLARFENDRTISFIPPDGEFDLMSYRMSSNV 273
Score = 29.9 bits (64), Expect = 0.41
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 178 LKVFEPKLNYSDHDVIKWVRYIGRSG 101
LK+ EPKLNY + WVRY+ ++G
Sbjct: 397 LKITEPKLNY---HAMPWVRYVTQNG 419
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 30.3 bits (65), Expect = 0.31
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -1
Query: 663 LTTVSSTQCVKLSKFETE-HSISFIPPDGEFELMRYRT--TKDISLPFRVIPLVREVGRT 493
L V Q V L +++ I FIPPDG+F L ++T SLP V + GR
Sbjct: 227 LGNVRFHQSVNLKRWKQHPDQIEFIPPDGKFTLASFQTDFATQKSLPVVVEAKNKLDGRF 286
Query: 492 KMEVQGCAEE*LQTL 448
++ ++ ++ ++ L
Sbjct: 287 EVRIRNTGKKSVENL 301
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.2
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 359 TSLSPSSKSVAPRWCSAELESS--LRSSVRAGRV*SYSSAQPXTSILVRPTSRTSGMTRN 532
+++ PSS SV S+ L SS L SS + S SS+QP S T ++ T
Sbjct: 146 SAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTST 205
Query: 533 GRDMSFVVRYLMSSNSPS 586
+ SS+SPS
Sbjct: 206 SSSYLSSSSVVSSSSSPS 223
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 323 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 180
K++ + TQ+ +ELL T T+++W P + + S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 644 VELTVVNDHYWLPRXXPDHCPCYPICLHFPFXGLHH 751
VE T+ + L PDH P + + +HF F G HH
Sbjct: 199 VEYTMHRFLFHLDEYTPDH-PIF-LTMHFAFHGCHH 232
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 452 PSLLGQKIEVKIPTPLNTSGVQLICLK 372
PS+L IE + T +G+Q+IC+K
Sbjct: 242 PSILSSSIETFLRTLKRETGLQVICIK 268
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 596 KEMEC-SVSNLLSFTHWVELTVVNDHYWLPRXXPDHCPCYPICLHFPFXGLHH 751
+E EC S N+ +WV++ ++ WL + C YP+ F H
Sbjct: 1651 EEKECFSFKNVDGPANWVDIDDYHEADWLLPQQNEKCSIYPLAFSPRFTYYRH 1703
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 394 PLVFSGVGIFTSIFCPSREGLKLLF 468
P+V SG G+ ++CP++ G L+F
Sbjct: 162 PVVSSG-GVMADLWCPAQRGTALIF 185
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 630 LSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRV 523
L KF+TE + D L Y +KDIS FRV
Sbjct: 409 LFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRV 444
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 416 PTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT 258
P L+ + VQL+ L + Y ASEN + K +R+A + A+ +L + T
Sbjct: 229 PKKLSANDVQLLVLAIQKFYNASENTPLGK-ERLALLAAFSKGADFDLHKVAT 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,341
Number of Sequences: 5004
Number of extensions: 61479
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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