Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_N18
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827     29   4.7  
09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135           29   6.2  
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118...    28   8.2  

>01_05_0412 + 21929446-21929713,21931402-21931501,21931755-21931827
          Length = 146

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 149 VVRSPSEALGQLLANPTPLG*AFARPSVLVKLE 51
           + R+ S  LG+LLA+P+PL      PS+L +++
Sbjct: 7   LARAGSSLLGRLLASPSPLRAGLPPPSLLSRIQ 39


>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
          Length = 485

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 188 SESRPAEKIRRETQRADAWARLHVD 262
           SES+P E  RR   R+ AWAR+  D
Sbjct: 92  SESQPLETARRGALRSHAWARVGSD 116


>01_06_0265 -
           28011181-28011240,28011298-28011375,28011493-28011802,
           28012913-28013533,28013733-28013818
          Length = 384

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 440 AAADYSPNSDHAGASHRRRPRHVLTDPSD 354
           +AA +SP  DHA A H     H  +D SD
Sbjct: 101 SAAAWSPARDHAHAHHNHHHHHHPSDSSD 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,034,042
Number of Sequences: 37544
Number of extensions: 404533
Number of successful extensions: 920
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)