Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_N18
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.67 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.67 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.88 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.88 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 9   FFFVIERLLVARRP-FQFHQDRWAS 80
           F  ++ RLLV RRP ++F  +R++S
Sbjct: 349 FIHILPRLLVMRRPQYKFETNRYSS 373


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +3

Query: 9   FFFVIERLLVARRP-FQFHQDRWAS 80
           F  ++ RLLV RRP ++F  +R++S
Sbjct: 349 FIHILPRLLVMRRPQYKFETNRYSS 373


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 339 CKGYWI*WIRKDVSRASTVTGSCMI 413
           CKG++   +RKD+S A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 339 CKGYWI*WIRKDVSRASTVTGSCMI 413
           CKG++   +RKD+S A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 512 RKYMKSASERYFDKAMRHDNRLIVAAADYSPNSDH 408
           RKY +++ ER  D+A R  +R     +  S N+ H
Sbjct: 56  RKYRETSKERSRDRAERERSREPKIISSLSNNTIH 90


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = +2

Query: 74  GEQMLSQEGWDLLTTARAPPKET*QLKSNCFANESTTGSESRPAEKIRRETQRADAWARL 253
           G  +L+Q+  D +T  +A   E   ++  C  +  T        + ++RE+    + AR 
Sbjct: 258 GFSLLAQD--DQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIHNSSNARF 315

Query: 254 HVDLFVEFAE 283
            +D   +FAE
Sbjct: 316 LMDSMFDFAE 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,533
Number of Sequences: 438
Number of extensions: 4249
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)