Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_N16
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 188 6e-49
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 188 6e-49
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 27 3.0
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 3.9
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 3.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 5.2
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 26 6.9
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 26 6.9
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.9
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 188 bits (459), Expect = 6e-49
Identities = 100/218 (45%), Positives = 134/218 (61%)
Frame = -2
Query: 774 IMEIQLXRGTIEDKVKWAREHSGETYSLSILCLPKMK*LTALVSPKGKGYKGVTSRWHTK 595
+MEIQ+ G++ DKV+WAREH +T + + + + + +GKG +G T+RW TK
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTARWGTK 236
Query: 594 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQENLSYWTKESTKRMAK 415
+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++ + + K +
Sbjct: 237 RLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNAST 296
Query: 414 LLKTMHLLSMICLRNPLHRWEVSPIMVK*TTTL**XKGCCMGPKKRIITLRKSLRVHTKR 235
I R+ V V+ + G GP KR++TLRKSL HT R
Sbjct: 297 DFDATE--KRITPMGGFVRYGV----VENDFVM--LNGATPGPVKRVLTLRKSLLTHTSR 348
Query: 234 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 121
ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 349 KALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 55.6 bits (128), Expect = 7e-09
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 2/145 (1%)
Frame = -1
Query: 718 RTFWRNLFPVDSVFAQDEMIDCIGVTQGQRIQRCHFSLAHKEATP*DTQGS*E-SCLHWS 542
R + + S F Q+EMID IGVT+G+ + K +G + +C+
Sbjct: 196 REHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI--- 252
Query: 541 LASF*GVVHCSSC-WSERLSSPY*NEXRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSI 365
G H ++ W+ + R L+ I++ NAST++D +EK I
Sbjct: 253 -----GAWHPANVQWTVARAGNAGYMHRTQ--LNSKIYRIGAGDDAKNASTDFDATEKRI 305
Query: 364 TPMGGFPHYGEVNNDFVMXQGLLHG 290
TPMGGF YG V NDFVM G G
Sbjct: 306 TPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 188 bits (459), Expect = 6e-49
Identities = 100/218 (45%), Positives = 134/218 (61%)
Frame = -2
Query: 774 IMEIQLXRGTIEDKVKWAREHSGETYSLSILCLPKMK*LTALVSPKGKGYKGVTSRWHTK 595
+MEIQ+ G++ DKV+WAREH +T + + + + + +GKG +G T+RW TK
Sbjct: 178 LMEIQVNGGSVADKVEWAREHFEKTVDIKST-FEQNEMIDVIGVTRGKGNEGTTARWGTK 236
Query: 594 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQENLSYWTKESTKRMAK 415
+LPRKTH+GLRKVACIGAWHP+ V +TVARAG GY HRT++ + + K +
Sbjct: 237 RLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAKNAST 296
Query: 414 LLKTMHLLSMICLRNPLHRWEVSPIMVK*TTTL**XKGCCMGPKKRIITLRKSLRVHTKR 235
I R+ V V+ + G GP KR++TLRKSL HT R
Sbjct: 297 DFDATE--KRITPMGGFVRYGV----VENDFVM--LNGATPGPVKRVLTLRKSLLTHTSR 348
Query: 234 AALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 121
ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 349 KALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 55.6 bits (128), Expect = 7e-09
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 2/145 (1%)
Frame = -1
Query: 718 RTFWRNLFPVDSVFAQDEMIDCIGVTQGQRIQRCHFSLAHKEATP*DTQGS*E-SCLHWS 542
R + + S F Q+EMID IGVT+G+ + K +G + +C+
Sbjct: 196 REHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACI--- 252
Query: 541 LASF*GVVHCSSC-WSERLSSPY*NEXRKSIVLDQGIHKKDGKVIKNNASTEYDLSEKSI 365
G H ++ W+ + R L+ I++ NAST++D +EK I
Sbjct: 253 -----GAWHPANVQWTVARAGNAGYMHRTQ--LNSKIYRIGAGDDAKNASTDFDATEKRI 305
Query: 364 TPMGGFPHYGEVNNDFVMXQGLLHG 290
TPMGGF YG V NDFVM G G
Sbjct: 306 TPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 209 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 96
NS+ PR + R+ L L + HS+R F KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 142 HGYTQEGSYSRRSCGYHNPS 83
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 456 LSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 361
L W++E KR+ KLL M L + C + +H
Sbjct: 337 LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 645 SPKGKGYKGVTSRWHTKKLPRKTHK 571
+PK K + G T WH+ PR T K
Sbjct: 412 TPKSK-HAGSTQEWHSHTTPRSTSK 435
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 771 MEIQLXRGTIEDKVKWAREHSG 706
M +Q TI KW REHSG
Sbjct: 46 MPVQYKGQTISASHKWTREHSG 67
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 393 VDALFLITLPSFLWIPWSNTIDFLXSFQY 479
V LF I ++ W W+ DF +F Y
Sbjct: 220 VQILFSIPFLAYFWSYWTQAFDFGRAFDY 248
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 390 SVDALFLITLPSFLWIPW 443
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,797
Number of Sequences: 5004
Number of extensions: 68475
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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