Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_N16
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 191 6e-49
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 184 9e-47
11_04_0146 - 14091671-14092357,14092996-14093229 31 1.3
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 30 2.3
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 5.4
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329 29 5.4
04_01_0592 + 7808821-7809210 28 7.2
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 191 bits (465), Expect = 6e-49
Identities = 106/223 (47%), Positives = 138/223 (61%), Gaps = 7/223 (3%)
Frame = -2
Query: 774 IMEIQLXRGTIEDKVKWAREHSGETYSLSILCLPKMK*LTALVSPKGKGYKGVTSRWHTK 595
+MEIQ+ GTI DKV + + + + + K + + + KGKGY+GV +RW
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDIIGVTKGKGYEGVVTRWGVT 239
Query: 594 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQENLSYWTKESTKRMAK 415
+LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEM K++ K
Sbjct: 240 RLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEM------------NKKVYK 287
Query: 414 LLKTMHLLSMICLRNPLHRWEVSPI-------MVK*TTTL**XKGCCMGPKKRIITLRKS 256
+ K+ C +++P+ +VK + KGCC+GPKKR++TLR+S
Sbjct: 288 IGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLM--IKGCCVGPKKRVVTLRQS 345
Query: 255 LRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 127
L T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 346 LLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 62.5 bits (145), Expect = 4e-10
Identities = 51/147 (34%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Frame = -1
Query: 712 FWRNLFPVDSVFAQDEMIDCIGVTQGQRIQRCHFSLAHKEATP*DTQGS*ESCLHWSLAS 533
F+ PVD+VF +DEMID IGVT+G+ + + P T H L
Sbjct: 201 FFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRKT--------HRGLRK 251
Query: 532 F*GVVHCSSCWSE-RLSSPY*NEXRKSIVLDQGIHKKDGKVIKNN-----ASTEYDLSEK 371
V C W R+S + ++KK K+ K+ A TE+D +EK
Sbjct: 252 ----VACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEK 307
Query: 370 SITPMGGFPHYGEVNNDFVMXQGLLHG 290
ITPMGGFPHYG V D++M +G G
Sbjct: 308 DITPMGGFPHYGVVKGDYLMIKGCCVG 334
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 184 bits (447), Expect = 9e-47
Identities = 102/215 (47%), Positives = 134/215 (62%), Gaps = 7/215 (3%)
Frame = -2
Query: 774 IMEIQLXRGTIEDKVKWAREHSGETYSLSILCLPKMK*LTALVSPKGKGYKGVTSRWHTK 595
+MEIQ+ GTI DKV + + + + + K + + + KGKGY+GV +RW
Sbjct: 181 LMEIQINGGTIADKVDYGYKFFEKEIPVDAV-FQKDEMIDIIGVTKGKGYEGVVTRWGVT 239
Query: 594 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQENLSYWTKESTKRMAK 415
+LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEM K++ K
Sbjct: 240 RLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEM------------NKKVYK 287
Query: 414 LLKTMHLLSMICLRNPLHRWEVSPI-------MVK*TTTL**XKGCCMGPKKRIITLRKS 256
+ K+ C +++P+ +VK + KGCC+GPKKR++TLR+S
Sbjct: 288 IGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLM--IKGCCVGPKKRVVTLRQS 345
Query: 255 LRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 151
L T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 346 LLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 62.5 bits (145), Expect = 4e-10
Identities = 51/147 (34%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Frame = -1
Query: 712 FWRNLFPVDSVFAQDEMIDCIGVTQGQRIQRCHFSLAHKEATP*DTQGS*ESCLHWSLAS 533
F+ PVD+VF +DEMID IGVT+G+ + + P T H L
Sbjct: 201 FFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRKT--------HRGLRK 251
Query: 532 F*GVVHCSSCWSE-RLSSPY*NEXRKSIVLDQGIHKKDGKVIKNN-----ASTEYDLSEK 371
V C W R+S + ++KK K+ K+ A TE+D +EK
Sbjct: 252 ----VACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEK 307
Query: 370 SITPMGGFPHYGEVNNDFVMXQGLLHG 290
ITPMGGFPHYG V D++M +G G
Sbjct: 308 DITPMGGFPHYGVVKGDYLMIKGCCVG 334
>11_04_0146 - 14091671-14092357,14092996-14093229
Length = 306
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 633 KGYKGVTSRWHTKKLPRKTHKGLRKVACIGAW 538
K YK T RWH K++ K K KV +W
Sbjct: 266 KIYKDRTKRWHDKRIKHKEFKAGDKVLLFNSW 297
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -3
Query: 191 PSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 48
PS V+ +RRR+ R +S + R + F+K P P+R ++ ++E
Sbjct: 292 PSDVVDSARRRMARRNSLGNERTVTFSK----PSPERNSVSSTRSIKE 335
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 176 VDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 48
V S RL RL W + + LRL P+R C A+ VV E
Sbjct: 11 VSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCAGAVRVVAE 53
>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
Length = 264
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 633 KGYKGVTSRWHTKKLPRKTHKGLRKV 556
K YK T RWH K++ K K KV
Sbjct: 29 KIYKDKTKRWHDKRIKHKEFKAREKV 54
>04_01_0592 + 7808821-7809210
Length = 129
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 645 SPKGKGYKGVTSRWHTKKLPRKTHKGLRKV 556
S K YK T RWH K++ K K L KV
Sbjct: 25 SHNAKIYKERTKRWHDKRIKIKKFKPLDKV 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,213,621
Number of Sequences: 37544
Number of extensions: 480336
Number of successful extensions: 1314
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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