Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M23
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    33   0.065
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.35 
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    28   1.8  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    28   1.8  
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf...    26   5.6  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    26   5.6  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    26   7.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   9.8  

>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 32.7 bits (71), Expect = 0.065
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 710 PKDSSXKPQRYNGGRAXEDFIKYVSEQATSE 618
           PKD   KP+ Y G R+ E  I+Y+++++ ++
Sbjct: 222 PKDDKDKPELYEGDRSLESLIEYINKKSGTQ 252


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 452  NTDKLRSHISLFFTLHSSFTQIHTQIFHGKVLNHNS 559
            + D L + + LF T+ S F  I  + FHG +LN  S
Sbjct: 2757 SADFLGNPVGLFTTITSGFADIFYEPFHGFILNEGS 2792


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 390 ERQCLCTQRM-LFISAFPWTDITQINSEVIFHCFSHYIHP 506
           E + +C   + +F   FP   +  +N +V+ HC SH   P
Sbjct: 594 EHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 100 FNNKRTSQLM*LIYHPQVE---VYQYTTYDNTSDFYKNV 207
           F N R  Q+M ++ HP +     Y YTT DN+ + Y N+
Sbjct: 69  FKN-RELQIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106


>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
           protein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = +2

Query: 98  ILIINGHLNLCN*FITHKSRFISTQHMTTLAIFIKMFIISLPKGLKC--YHTFVPRYTES 271
           + I+N  L++C+          + +      I  K   ISLP  +    YH     Y   
Sbjct: 108 VRIVNERLDICD----KAYELAAVECPVEPGIITKQATISLPWAIPPGRYHVLATAYNAD 163

Query: 272 NER*NCVYASVLF 310
            E+  CV ASV F
Sbjct: 164 GEQLTCVSASVSF 176


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 707 KDSSXKPQRYNGGRAXEDFIKYVSEQATSELK 612
           K SS     YNG R+ +   K+VS+   S++K
Sbjct: 116 KGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVK 147


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 478 FIVFHITFILHTNTHADLSWXSFESQQHAYN 570
           F V ++  I+HT  H    W S+E  +   N
Sbjct: 14  FYVLYLEKIIHTRPHKKCDWRSWEQWESTGN 44


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 426 ISAFPWTDITQINSEV-IFHCFSHYIHPSHKYT 521
           IS   +TD  +INS +  F CF H + PS K T
Sbjct: 780 ISRCSFTDF-EINSILNFFFCFLHTVEPSGKLT 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,481
Number of Sequences: 5004
Number of extensions: 61398
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)