Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M23
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0810 + 11429776-11429985,11430003-11430935                       32   0.63 
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609...    30   2.6  
04_03_0653 - 18429736-18431379                                         28   7.8  

>03_02_0810 + 11429776-11429985,11430003-11430935
          Length = 380

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 549 ITTARLQLFLSLFGVTLSVPALKFACGLFRN 641
           +TT  +++    FG   SVP + F CGLF N
Sbjct: 123 VTTGLIEVDKFTFGAGASVPGVAFGCGLFNN 153


>07_03_1473 +
           26756338-26757583,26759067-26759472,26760867-26760930,
           26760975-26761055,26763350-26763588,26763689-26763947,
           26764359-26764538,26764937-26765092,26765174-26765350
          Length = 935

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 692 KPQRYNGGRAXEDFIKYVSEQATSELKGWDRKGNAKQGKEE 570
           K  + NG    +  +   SE+A+S L  +  KG+  QGKEE
Sbjct: 323 KHVKINGNLVIKSIV--ASEKASSRLSNYGEKGSGNQGKEE 361


>04_03_0653 - 18429736-18431379
          Length = 547

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +2

Query: 236 CYHTFV-PRYTESNER*NCVYASVLFCKSSKVILDLLSVNIM---VNECNITIARGTTMS 403
           C   F+ PR   +  R   +       +S+  + DL+++ +    V + +IT+ +   + 
Sbjct: 124 CVSAFMEPRVAVAPRRARSLRLEFFAARSTGFVEDLIAMAVGAWGVEDLDITVVKPALVE 183

Query: 404 LYPKNAFHICFPLDRYNTDKLRSHI 478
             P  AF  CFP  R + + LRS I
Sbjct: 184 QGPCYAF--CFPDHRLSAESLRSRI 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,757
Number of Sequences: 37544
Number of extensions: 338786
Number of successful extensions: 739
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)