Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M21
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   113   4e-26
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   113   4e-26
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   0.74 
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.3  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  113 bits (271), Expect = 4e-26
 Identities = 51/97 (52%), Positives = 62/97 (63%)
 Frame = -1

Query: 705 REHLEXPIPVDSVXAQDEMXDCIXXXXXXXXXXXXXRWHTKKLPRKTHKGLRXVACIGAW 526
           REH E  + + S   Q+EM D I             RW TK+LPRKTH+GLR VACIGAW
Sbjct: 196 REHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAW 255

Query: 525 HPSRVSFTVARAGQKGYHHRTEMNKXIYRIGSRNPQK 415
           HP+ V +TVARAG  GY HRT++N  IYRIG+ +  K
Sbjct: 256 HPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292



 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 31/50 (62%), Positives = 37/50 (74%)
 Frame = -3

Query: 292 GCCMGPXKRIITXRKSLRVHTKRAAXEKIXLKFXDTSSKFGHGRFQTPAD 143
           G   GP KR++T RKSL  HT R A E + LK+ DT+SKFGHGRFQTPA+
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAE 375



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 25/41 (60%), Positives = 29/41 (70%)
 Frame = -2

Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHGTXK 270
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   G  K
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVK 333



 Score = 29.5 bits (63), Expect = 0.56
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 763 HIMEIQLXRGTXEDKVKWXQRTF 695
           H+MEIQ+  G+  DKV+W +  F
Sbjct: 177 HLMEIQVNGGSVADKVEWAREHF 199


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  113 bits (271), Expect = 4e-26
 Identities = 51/97 (52%), Positives = 62/97 (63%)
 Frame = -1

Query: 705 REHLEXPIPVDSVXAQDEMXDCIXXXXXXXXXXXXXRWHTKKLPRKTHKGLRXVACIGAW 526
           REH E  + + S   Q+EM D I             RW TK+LPRKTH+GLR VACIGAW
Sbjct: 196 REHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAW 255

Query: 525 HPSRVSFTVARAGQKGYHHRTEMNKXIYRIGSRNPQK 415
           HP+ V +TVARAG  GY HRT++N  IYRIG+ +  K
Sbjct: 256 HPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292



 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 31/50 (62%), Positives = 37/50 (74%)
 Frame = -3

Query: 292 GCCMGPXKRIITXRKSLRVHTKRAAXEKIXLKFXDTSSKFGHGRFQTPAD 143
           G   GP KR++T RKSL  HT R A E + LK+ DT+SKFGHGRFQTPA+
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAE 375



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 25/41 (60%), Positives = 29/41 (70%)
 Frame = -2

Query: 392 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIQGLLHGTXK 270
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   G  K
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVK 333



 Score = 29.5 bits (63), Expect = 0.56
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 763 HIMEIQLXRGTXEDKVKWXQRTF 695
           H+MEIQ+  G+  DKV+W +  F
Sbjct: 177 HLMEIQVNGGSVADKVEWAREHF 199


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 130 HGYTQEGSYSRRSCGYHNPSGLLAQRLSVVRENK 29
           HGY+   +  R+ C YHNPS LL +   +   +K
Sbjct: 307 HGYSMY-ALERKMCNYHNPSILLIKAKKINANHK 339


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 472 SPY*NEQEXLSYWIKESTKGMAKLLKTMHLLSMICLRNPLHRWEVSP 332
           SP+    + L+Y   E  +G  K +     +  + LRNPL R++VSP
Sbjct: 63  SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,718
Number of Sequences: 5004
Number of extensions: 58532
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)