Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M20
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   9.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.8  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 255 PVVRARVDAFALVTFHQLLVVPYPHGAA 338
           P+   ++  F L T HQL  V  PH  A
Sbjct: 152 PMCSPKLHVFDLNTSHQLKQVVMPHDIA 179


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 353 VGEIVGGSMRIWDHEELMEGYKREGIDPSP 264
           V  +  G   +  HE+L+E + R G  P+P
Sbjct: 130 VRALAAGGNHLPFHEKLVESFPRGGSLPTP 159


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 664 SWXRPKDSSYTNS 626
           SW RP++S+ T S
Sbjct: 46  SWSRPRESAQTTS 58


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 320 WDHEELMEGYKREGIDPSPYYWYT 249
           WD   ++EG + +  D    YW T
Sbjct: 262 WDGSNMVEGNESDHNDGRLRYWRT 285


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 430 SAGNLHSSIGTPMASVIFRSGISGM 504
           + G L  S G PM  +   S +SGM
Sbjct: 405 AGGQLPPSAGAPMPPIPNMSNMSGM 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,054
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)