Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_M18
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 93 5e-20
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 93 5e-20
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 28 1.9
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.5
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 26 5.9
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.8
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 93.1 bits (221), Expect = 5e-20
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -2
Query: 388 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 209
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352
Query: 208 KINLKFI 188
++LK+I
Sbjct: 353 PVSLKWI 359
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/60 (60%), Positives = 44/60 (73%)
Frame = -1
Query: 590 GTQRSYPVRHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 411
GT+R P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 66.5 bits (155), Expect = 5e-12
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = -3
Query: 768 QKKXHIMESXLXGYHRGQS-EWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 592
QKK H+ME + G EWAREH EK + + S F Q+EMID I T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 591 WHTKKLPRKTXQG 553
W TK+LPRKT +G
Sbjct: 233 WGTKRLPRKTHRG 245
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -1
Query: 185 TSSKFGHGRFQTPADKAAFMGTLKKD 108
T+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 361 TASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 93.1 bits (221), Expect = 5e-20
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = -2
Query: 388 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 209
NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352
Query: 208 KINLKFI 188
++LK+I
Sbjct: 353 PVSLKWI 359
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/60 (60%), Positives = 44/60 (73%)
Frame = -1
Query: 590 GTQRSYPVRHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 411
GT+R P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 66.5 bits (155), Expect = 5e-12
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = -3
Query: 768 QKKXHIMESXLXGYHRGQS-EWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSR 592
QKK H+ME + G EWAREH EK + + S F Q+EMID I T+R
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 591 WHTKKLPRKTXQG 553
W TK+LPRKT +G
Sbjct: 233 WGTKRLPRKTHRG 245
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = -1
Query: 185 TSSKFGHGRFQTPADKAAFMGTLKKD 108
T+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 361 TASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 492 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMTCLRNPLH 346
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 129 HGYTQEGSYSRRSCGYHNPS 70
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 256 TLRKSLRVHTKRAALEKINLKFITPRPSSVMVDSRRRLT 140
T+R SL +T+R+++ N FI+ P+ + R L+
Sbjct: 63 TMRPSLAPNTRRSSVRVSNASFISQTPNITSIKDPRPLS 101
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 375 SVDALFLITLPSFLWIPW 428
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,423
Number of Sequences: 5004
Number of extensions: 70188
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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