Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M17
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    29   1.0  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.2  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    25   9.5  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.5  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   9.5  

>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 116 TDYSEPRHRTELYPDLRSRDARVKKKTDSIDP 211
           T  SEPR  T +  DL + D+ V   T+ +DP
Sbjct: 104 TQMSEPREVTTIVKDLNNGDSFVLNVTEPVDP 135


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 477 AIVILLSNERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEAS 343
           A+V+    E  +SF  L + +  A G +K+P A + L  S+ E S
Sbjct: 145 AVVLKGGTESAKSFAALSNVVRSALGKSKVPQAAVQLVQSREEVS 189


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 684  PEKVPPGITGLWQPSVHSDVAFDPSMSAXPIIAKQNSPSV 565
            P   P GI  + +PSV +     PS++  P+ A   +P V
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 206 DPRDPNGLRRRVSRFECETRLVKSHC 283
           +P+D N  R+R     CE RL+ S C
Sbjct: 32  NPKDCNSKRKRSVTECCEIRLITSKC 57


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 117 VDDFRSWRGVVLGRAASCCDLLRLS 43
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 405 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 280
           A  A+  +A     A +AEA   E+ K+++  EP+++  +K+
Sbjct: 89  AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,254,098
Number of Sequences: 5004
Number of extensions: 65724
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)