Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_M17
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 33 0.35
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.35
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 28 7.6
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 28 7.6
01_06_0695 - 31292622-31293317 28 7.6
12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471... 28 10.0
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 10.0
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 28 10.0
05_02_0165 - 7256178-7256444 28 10.0
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 10.0
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -1
Query: 348 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRG 208
A+ A +GK + E E S+QCD T + +S RE ++R+P+ + G
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAAAG 475
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 80 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 208
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 435 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 337
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +2
Query: 164 RSRDARVKKKTDSIDPRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSAR 343
R R R+ + + +I P RRR R+ +SH SRGST+S L +
Sbjct: 396 RLRRRRINESSLAISPERNGEQRRRDERYRERAHGHRSHRDHHQSSRGSTLSSRLQGRIK 455
Query: 344 L 346
L
Sbjct: 456 L 456
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +2
Query: 20 SDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 199
+DESP A S R PS RQ++++ D + P + ++++ +T
Sbjct: 495 ADESPSAPPSPTRKLSKVKTPSQQDRQQKEAKEDRQQKEPNPTGTPS-KIAVSKLEGETT 553
Query: 200 SIDPRDPNGL--RRRVSRFECETRLVKSHCLEPP 295
P +P G VSR E ET+ K + + P
Sbjct: 554 QKKP-NPTGTPSEMAVSRLEGETKQKKPNPIGMP 586
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 32 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 166
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>12_02_0699 +
22245933-22246213,22246493-22246575,22246844-22247125,
22248725-22248986,22250146-22251781,22251910-22252416
Length = 1016
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +3
Query: 108 SRLQTIPSPDIELSYIRTFG--AVMHV--LRKKPIASIPAIQMGFDV 236
+R+ PSPD+E ++R G + H L ++ IAS+P ++ +D+
Sbjct: 113 TRIGQYPSPDVEHLFLRCTGVATIWHTFGLDEQQIASLPQLEGVWDI 159
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 26 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 205
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 206 D 208
+
Sbjct: 791 E 791
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/85 (25%), Positives = 29/85 (34%)
Frame = +2
Query: 53 NRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDPRDPNGLR 232
+RS+ A R +S D P HR P R R K D R P+
Sbjct: 501 SRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAPA 560
Query: 233 RRVSRFECETRLVKSHCLEPPDSRG 307
++ S R S P S+G
Sbjct: 561 KKGSSKYNRRRSSSSRSSSPAGSKG 585
>05_02_0165 - 7256178-7256444
Length = 88
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -1
Query: 465 LLSNERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRE 298
L S R+ S G A+G+ P+ GLC +E + E+GK T R+
Sbjct: 19 LASQPRHWSAGLAARAVGQRCSDLCQPARGLCTCIKPSEQRVREAGKHPGTARYRK 74
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 357 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRGSMLSVFFL 184
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 183 TRASR 169
TRA+R
Sbjct: 64 TRAAR 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,599,077
Number of Sequences: 37544
Number of extensions: 494282
Number of successful extensions: 1343
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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