Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M17
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical...    28   6.8  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = -1

Query: 489 WLVVAIVILLSNERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTV 310
           +L + I   L N +   FG L H  G       LP   +    S+  + ++++G    + 
Sbjct: 195 YLYMKIFKKLRNHQLYMFGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSP 254

Query: 309 EPRESGGSKQCDFTSRVSH--SKRETRRRSP 223
             R+SGGSK+   +    H  +K + R RSP
Sbjct: 255 TRRQSGGSKERSPSQPDIHIVAKPQQRWRSP 285


>AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical
           protein Y38H6C.14 protein.
          Length = 814

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 44  LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDPRD 217
           ++ +RS +     S+   Q+  S +DY  PRH  +L P  RS + RV  +     PR+
Sbjct: 71  ITQHRSSYKVTKSSSCHFQDEASPSDYQMPRH-LDLKP--RSSEVRVPVRAAPEPPRE 125


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 2/103 (1%)
 Frame = -1

Query: 459 SNERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 280
           S  R+ S   +V ++ R +   +  S G     +    S   S +      PR   GS+ 
Sbjct: 90  STRRSSSRRSVVRSVSRGSKSRRSSSRGSVYGRTGRSRS---SKRSRSRSRPRTRSGSRS 146

Query: 279 CDFTSRVSH--SKRETRRRSPFGSRGSMLSVFFLTRASRLRRS 157
              +   S   S+R +RRRS   +RG   S    T A R  RS
Sbjct: 147 SSRSRSGSRRSSRRRSRRRSSSKARGRRASTAKKTPAKRRSRS 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,369,677
Number of Sequences: 27780
Number of extensions: 383970
Number of successful extensions: 1069
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)