Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M15
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       29   3.5  
01_06_0581 - 30386018-30386440                                         29   6.1  
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285...    28   8.1  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -2

Query: 634 RAPGTNGDRXARXPXXXPGGXXGXGGLGG 548
           RAPG  G      P   PGG  G GGLGG
Sbjct: 184 RAPGGGGGGGG--PGRAPGGGGGGGGLGG 210


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 274 SGVRSQVLERLEMRLRSGGGGARR 345
           SG+  +V +R+E   R GGGG RR
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRR 54


>02_04_0028 +
           19027510-19027983,19028087-19028278,19028369-19028545,
           19029568-19029663,19030487-19030618,19030950-19031008,
           19031234-19031321,19031433-19031693
          Length = 492

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 507 AXXGGLSGXAXNXXPPRPPXPXXPP 581
           A  GG S  +    PPRPP P  PP
Sbjct: 83  AAQGGGSAASRPPRPPRPPLPPRPP 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,131,346
Number of Sequences: 37544
Number of extensions: 267839
Number of successful extensions: 1382
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)