Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_M15
(842 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 33 0.19
U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protei... 32 0.59
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 31 1.4
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 30 1.8
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 4.1
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 4.1
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 29 4.1
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 4.1
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.5
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 5.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.5
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 28 7.2
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 7.2
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 7.2
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 28 9.5
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 33.5 bits (73), Expect = 0.19
Identities = 26/92 (28%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Frame = +3
Query: 495 NAXPAXXGGL---SGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGARXPXTXXRXTX 665
NA PA G+ G A + PP PP P PPG A PGA T
Sbjct: 191 NAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGG 250
Query: 666 XXXXXXPXPRVPXXLXLTWEXTXPXPXXXXSP 761
P P P + P P P
Sbjct: 251 PGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGP 282
>U41011-8|AAA82291.2| 321|Caenorhabditis elegans Collagen protein
114 protein.
Length = 321
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 628 PGTNGDRXARXPXXXPG--GXXGXGGLGGXSLXAXPDRPPXXAGSA 497
PG GD P PG G G G+GG PD PP +G +
Sbjct: 240 PGPPGDSGIPGPPGPPGMAGPDGIPGMGGAKGQNGPDGPPGASGES 285
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/63 (33%), Positives = 23/63 (36%)
Frame = +3
Query: 441 CPXRPXXFXXRHLP*XXXNAXPAXXGGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPX 620
CP P + P N P G G A PP PP P PPG +P
Sbjct: 186 CPTGPPGPPGKQGP-KGPNGEPGAPGTPGGNAL-PGPPGPPGPQGPPGADGLPGNPGAPG 243
Query: 621 VPG 629
VPG
Sbjct: 244 VPG 246
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/68 (27%), Positives = 21/68 (30%)
Frame = +3
Query: 498 AXPAXXGGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGARXPXTXXRXTXXXXX 677
A PA G +G PP PP P P G A +P G T
Sbjct: 169 AGPAGPDGEAGSPAAPSPPGPPGPPGPAGPAGNDGAAGTPGPDGPAGESTYPEPAGPGPA 228
Query: 678 XXPXPRVP 701
P P P
Sbjct: 229 GPPGPAGP 236
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 504 PAXXGGLSGXAXNXXPPRPPXPXXPPG 584
PA G G A + P PP P PPG
Sbjct: 168 PAGPAGPDGEAGSPAAPSPPGPPGPPG 194
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/68 (27%), Positives = 21/68 (30%)
Frame = +3
Query: 498 AXPAXXGGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGARXPXTXXRXTXXXXX 677
A PA G +G PP PP P P G A +P G T
Sbjct: 168 AGPAGPDGEAGSPAAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPA 227
Query: 678 XXPXPRVP 701
P P P
Sbjct: 228 GPPGPAGP 235
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 495 NAXPAXXGGLSGXAXNXXPPRPPXPXXPPG 584
+A PA G G N PP PP P PG
Sbjct: 227 DAGPAGPPGPPGAPGNDGPPGPPGPKGSPG 256
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +3
Query: 504 PAXXGGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGARXP 641
P G SG N P P P PPG A +P PG P
Sbjct: 229 PVGPPGPSGQPGNDGTPGQPGPKGPPGPDGKPGADGNPGQPGPVGP 274
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +3
Query: 504 PAXXGGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGARXP 641
P G SG N P P P PPG A +P PG P
Sbjct: 229 PVGPPGPSGQPGNDGTPGQPGPKGPPGPDGKPGADGNPGQPGPVGP 274
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 495 NAXPAXXGGLSGXAXNXXPPRPPXPXXPPG 584
+A PA G G N PP PP P PG
Sbjct: 227 DAGPAGPPGPPGAPGNDGPPGPPGPKGSPG 256
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 516 GGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGARXP 641
GG G A PP PP P PG G PG P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 516 GGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGARXP 641
GG G A PP PP P PG G PG P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -2
Query: 625 GTNGDRXARXPXXXPGGXXGXGGLGGXSLXAXPDRP 518
G +GD + P PGG G G G P RP
Sbjct: 163 GPSGDNGRKGPPGPPGGPGGPGEGGDGGRPGNPGRP 198
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 516 GGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGARXP 641
GG G A PP PP P PG G PG P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 516 GGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGARXP 641
GG G A PP PP P PG G PG P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGP 193
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +3
Query: 504 PAXXGGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPG 629
PA G A PP PP P PPG A +P PG
Sbjct: 193 PAGPAGEDAAAPES-PPGPPGPPGPPGKDGEAGAPGAPGGPG 233
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +3
Query: 504 PAXXGGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGAR 635
PA G G PP PP P P G G + P PG +
Sbjct: 145 PAGPPGPQGNKGPLGPPGPPGPEGPNG-TAGNKGPAGPPGPGGK 187
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 519 GLSGXAXNXXPPRPPXPXXPPG 584
G G N PP PP P PPG
Sbjct: 213 GEPGKVINGAPPGPPGPPGPPG 234
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +3
Query: 504 PAXXGGLSGXAXNXXPPRPPXPXXPPGXXXGXRAXLSPXVPGAR 635
PA G G PP PP P P G G + P PG +
Sbjct: 147 PAGPPGPDGNKGPLGPPGPPGPEGPNG-EPGNKGPAGPPGPGGK 189
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 549 PPRPPXPXXPPGXXXGXRAXLSPXVPG 629
PP PP P PPG G P PG
Sbjct: 236 PPGPPGPPGPPGNPGGIGPRGPPGDPG 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,576,394
Number of Sequences: 27780
Number of extensions: 175973
Number of successful extensions: 1280
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -