Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M14
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    30   2.8  
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    29   4.8  
07_03_0890 - 22332768-22333382                                         29   6.4  
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    29   6.4  
01_05_0490 + 22672241-22674679                                         25   7.0  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    28   8.4  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = +3

Query: 630 PFPXNXXXTRXXXPAEPLXXPPXPXXPPARLXXXXAPXXCPXPPXXPNXA 779
           P P      R   P  P   PP P  PPA      +    P PP  P  A
Sbjct: 693 PPPPLPPANRTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAA 742



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 690 PPXPXXPPARLXXXXAPXXCPXPPXXPN 773
           PP P  PP  L     P   P PP  PN
Sbjct: 602 PPPPPPPPPILPNRSVPPPPPPPPPLPN 629


>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 669 PAEPLXXPPXPXXPPARLXXXXAPXXCPXPPXXP 770
           P+ P   PP P  PP+R          P PP  P
Sbjct: 324 PSNPPPAPPPPPPPPSRFNNTTPKPPPPPPPPEP 357


>07_03_0890 - 22332768-22333382
          Length = 204

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 669 PAEPLXXPPXPXXPPARLXXXXAPXXCPXPP 761
           PAE    PP P  PP R     A    P PP
Sbjct: 79  PAEATPPPPPPPPPPERAVPEAADTPPPPPP 109


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 669 PAEPLXXPPXPXXPPARLXXXXAPXXCPXPP 761
           P  P   PP P  PP +L     P   P PP
Sbjct: 350 PPPPPPPPPPPPPPPPKLNTAPKPPPPPPPP 380



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = +3

Query: 630 PFPXNXXXTRXXXPAEPLXXPPXPXXPPARLXXXXAPXXCPXPPXXPN 773
           P P     +    P  P   PP P  PP        P   P PP  P+
Sbjct: 338 PSPRPVQPSNAPPPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPPSVPS 385


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 25.0 bits (52), Expect(2) = 7.0
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 636 PXNXXXTRXXXPAEPLXXPPXPXXPPARL 722
           P +   T    PA P   PP P  PP+ +
Sbjct: 590 PDSTVRTTNPAPAPPRRPPPPPPPPPSSI 618



 Score = 21.8 bits (44), Expect(2) = 7.0
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = +3

Query: 699 PXXPPARLXXXXAPXXCPXPPXXPNXAAXXWRXP 800
           P  PP+R      P     PP  P  A   +  P
Sbjct: 655 PPQPPSRPAPPPPPPPQQQPPFYPRRAVVYYTYP 688


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +3

Query: 630 PFPXNXXXTRXXXPAEPLXXPPXPXXPPARLXXXXAPXXCPXPP 761
           P P     +    PA PL  PP P  PP       +    P PP
Sbjct: 97  PTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSANPSPP 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,128,631
Number of Sequences: 37544
Number of extensions: 149634
Number of successful extensions: 789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)