Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M14
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   5.7  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   5.7  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   5.7  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   7.5  

>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -3

Query: 769 GXXGGXGQXXGAXXXXSRAGGXXGXGGXXRGSAGXXXR 656
           G  GG G   G        GG  G GG  RGS G   R
Sbjct: 14  GFRGGRGGDRGGSRGGFGGGGRGGYGGGDRGSFGGGDR 51


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/68 (26%), Positives = 21/68 (30%)
 Frame = +3

Query: 576 PXSXXLGXXXLXPXIXXXPFPXNXXXTRXXXPAEPLXXPPXPXXPPARLXXXXAPXXCPX 755
           P +   G     P     P P     +    P      PP P  PP  L    A    P 
Sbjct: 593 PQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPP 652

Query: 756 PPXXPNXA 779
           PP  P+ A
Sbjct: 653 PPPPPSGA 660


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/68 (26%), Positives = 21/68 (30%)
 Frame = +3

Query: 576 PXSXXLGXXXLXPXIXXXPFPXNXXXTRXXXPAEPLXXPPXPXXPPARLXXXXAPXXCPX 755
           P +   G     P     P P     +    P      PP P  PP  L    A    P 
Sbjct: 419 PQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPP 478

Query: 756 PPXXPNXA 779
           PP  P+ A
Sbjct: 479 PPPPPSGA 486


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +3

Query: 678 PLXXPPXPXXPPARLXXXXAPXXCPXPPXXP 770
           P+  P  P  PP        P  CP PP  P
Sbjct: 48  PMPMPVCPPPPPCPAQFCPPPPICPPPPPPP 78


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 678 PLXXPPXPXXPPARLXXXXAPXXCPXPPXXP 770
           PL  PP P  PP        P  CP PP  P
Sbjct: 42  PLPCPPPPICPPQ---FCPPPPMCPPPPPPP 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,827,371
Number of Sequences: 27780
Number of extensions: 95634
Number of successful extensions: 342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)