Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M11
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0089 - 28288129-28288832,28290702-28290831,28291563-282918...    28   7.5  
01_06_0910 - 32922459-32922646,32922725-32922823,32923371-329235...    28   9.9  

>11_08_0089 -
           28288129-28288832,28290702-28290831,28291563-28291856,
           28292000-28292098,28292199-28292285,28292524-28292805
          Length = 531

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 412 GSAVGTTLQNADDATLTAETLFSEIQEQHEAVLGCRTAGPRARGGTSCCC 561
           G   GT    AD        L  E++++   V GCR+A  RA GG   CC
Sbjct: 430 GVGCGTAACGADVNVCCPSAL--EVRDREGRVAGCRSA-CRAMGGDRYCC 476


>01_06_0910 -
           32922459-32922646,32922725-32922823,32923371-32923502,
           32923585-32923743,32924553-32924711,32924897-32925052,
           32925846-32926044
          Length = 363

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -2

Query: 649 LGAQDKHPVKIEFKI-YLTEXTVIRWEAVVHNNMMYLRVPGVLQSGS--QGQL 500
           LGA D HP  + F++ Y T   V+R    + ++++ L+   V   GS  +GQ+
Sbjct: 134 LGAGDNHPRNLPFEVAYFTTKHVVRLALGMRHSLVLLKDNSVYGFGSTRRGQI 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,048
Number of Sequences: 37544
Number of extensions: 336315
Number of successful extensions: 760
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)