Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M10
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    31   1.6  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    31   1.6  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/67 (26%), Positives = 21/67 (31%)
 Frame = +2

Query: 677 PXTPXIXXRNXGVGPTPXWVXRXXXRXXXVPNXDPSXXXXQNXRXPPPXPXXGXXPPSXX 856
           P  P     N G GP          +    P   P      + + PPP P     PPS  
Sbjct: 62  PPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAP 121

Query: 857 PXPXXRP 877
           P P   P
Sbjct: 122 PPPPPPP 128


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +2

Query: 719 PTPXWVXRXXXRXXXVPNXDPSXXXXQNXRXPPPXPXXGXXPPSXXPXPXXRPL 880
           P P  +     R   +P+  P        R PPP P     PP   P    RPL
Sbjct: 352 PQPSHLPPLPPRPPTMPSMQPDMLAPGVPRFPPPPPPPDTRPPFMAPGVNARPL 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,553,230
Number of Sequences: 37544
Number of extensions: 210104
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)