Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M08
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    29   0.77 
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    28   1.8  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   5.4  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   7.2  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    25   9.5  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 185 ALAWGWPWWEAWCTRWEG 132
           A+  G  WWEAW T W G
Sbjct: 79  AVESGLSWWEAWITVWVG 96


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = -2

Query: 618 SYAGAXVDPGGENLYIIGGWAGXGQPEKSIEV-------FGWLKTNGQRPLP 484
           S+A      GG+ +YI GG A   QP+  + V       F  L++ G+ P P
Sbjct: 82  SHASHLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPSP 133


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 185 ALAWGWPWWEAWCTRWEG 132
           A+  G  WWEAW   W G
Sbjct: 81  AIELGLNWWEAWICVWVG 98


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 1/125 (0%)
 Frame = +2

Query: 263  GPVRAPRRDEPRPPHAAPNGAPGCRQGGTGAPRLAPIYGQSLSGRQAVPCVTASQCPQRS 442
            G    P+     PP  AP+GAP   +    AP   P+   S SG   VP   A   P   
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP---PVPAPS-SGIPPVPKPAAGVPP--- 1190

Query: 443  LPPHSRALRSTRVE-GRGLCPFVFSQPNTSILFSG*PXPAQPPMMYRFSPPGSTXAPAYD 619
            +PP S A    +   G    P   + P      +G P    P       P  S+ AP+  
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250

Query: 620  SARGS 634
            + R S
Sbjct: 1251 TPRSS 1255


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 302 PHAAPNGAPGCRQGGTGAPRLAPI 373
           P AAP  APG   GG   P +  +
Sbjct: 623 PGAAPGAAPGAAPGGDNGPEVEEV 646


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +3

Query: 495 SVHLSSASRILQYSFQVDPXRPSRR*CTDSL-PQGRPXLRR---TTARGAASPSPXTXRF 662
           SV LS      Q      P R S    T SL  + +  LRR   + + GAA+P+P     
Sbjct: 122 SVSLSPTDLQAQSKLIEKPRRRSASNATGSLNKKNQDPLRRFSISESAGAAAPTPSPSNS 181

Query: 663 XRPPTE 680
             PP+E
Sbjct: 182 KSPPSE 187


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 465 CDRPALRGGASVHLSSASRILQ--YSFQVDPXRPSRR*CTDSLPQGRPXLRRT 617
           CD  +   G   H S A+++ +  Y F+VDP  P       S P G   + +T
Sbjct: 6   CDVKSYGWGKVGHESLAAKLAEAGYGFEVDPNTPYAELWMGSHPSGPSFVMQT 58


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 129 DGKEFLSCVECLYSPDGEWTSLCVPPANIRSIANHSEKKKK 7
           DG  FL C   +  P+GEW     P   + S A+ S    K
Sbjct: 102 DGLTFLGCPVHI-GPNGEWAKRRKPRTTVESNASSSHLVSK 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,220
Number of Sequences: 5004
Number of extensions: 61563
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)