Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M03
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 670 IKSPDSIHQPPQA*HPFPSIP 608
           ++SP     PP A  P P IP
Sbjct: 401 VRSPAGGQLPPSAGAPMPPIP 421


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 623 WMLSLGWLVYGIGGFDDRVDVXXIAGXG 706
           W+ SLGW +  + G++  V    +   G
Sbjct: 176 WLFSLGWTIAPMFGWNRYVPEGNMTACG 203


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 530 PSSLGMXKGVSPPYFQVNDESQASRLIS 447
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 201


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 530 PSSLGMXKGVSPPYFQVNDESQASRLIS 447
           P+S+G+   VS P F+V    Q +  IS
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 140


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 623 WMLSLGWLVYGIGGFDDRVDVXXIAGXG 706
           W+ SLGW +  + G++  V    +   G
Sbjct: 52  WLFSLGWTIAPMFGWNRYVPEGNMTACG 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,704
Number of Sequences: 438
Number of extensions: 4107
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)