Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_M01
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   127   2e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   124   2e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.058
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   0.54 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.0  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.6  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  127 bits (306), Expect = 2e-30
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = -2

Query: 596 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 417
           P  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+R
Sbjct: 129 PRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVR 188

Query: 416 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 321
           G L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 189 GTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 22/48 (45%), Positives = 29/48 (60%)
 Frame = -1

Query: 738 FGQRXVXEVCPXTXGXTXIXGDVSXPGAFTNQIQXAFREPRLLIVSDP 595
           +G R V +    T G T I G  + PG FTN I   +REPRL++V+DP
Sbjct: 84  YGHRAVLKFAAHT-GATAIAGRFT-PGNFTNYITRTYREPRLIVVTDP 129


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  124 bits (298), Expect = 2e-29
 Identities = 58/90 (64%), Positives = 69/90 (76%)
 Frame = -2

Query: 596 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 417
           P  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189

Query: 416 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
           G + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 24/49 (48%), Positives = 30/49 (61%)
 Frame = -1

Query: 741 PFGQRXVXEVCPXTXGXTXIXGDVSXPGAFTNQIQXAFREPRLLIVSDP 595
           P+G R V +    T G T I G  + PG FTN I   +REPRL+IV+DP
Sbjct: 84  PYGHRAVLKFAAHT-GATAIAGRFT-PGNFTNYITRTYREPRLIIVTDP 130


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 596 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 435
           P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 188 PLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = -2

Query: 668 HXQVLLLTRSKXHSVNL---VS*LYRTPAQDH--QPITEASYVNIPVIALCNTDSPLRFV 504
           H   L+LT +     NL   VS +  T   +H  +  T A    +  + LC+ +S  RF 
Sbjct: 38  HLYSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFA 96

Query: 503 DIAIPCNTKSSHSI 462
           D+A+  NTK +H I
Sbjct: 97  DLAVAANTKFTHFI 110


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 370 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,951
Number of Sequences: 5004
Number of extensions: 49684
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)