Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_L22
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.67 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.3  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   6.3  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 337 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 239
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = -1

Query: 716 RGGXHGGSXPXXGXGGRXGGQXSERXXXETGXCQXXLGARGVXPXGGXGFGFGG 555
           RGG  GG     G  G  GG          G  +   G RG    GG G   GG
Sbjct: 11  RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRG-GARGGRGGSSGG 63


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 658 PPXLPPXPXXGXEPPCXPP 714
           PP  PP P  G EPP  PP
Sbjct: 9   PP--PPPPPPGFEPPSQPP 25


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 352 VQXCRRAPPPPLRSLISNLSNTCDLTPLPEW 260
           VQ      P P+ S    ++N  +L PLPEW
Sbjct: 2   VQTAALHGPKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,675
Number of Sequences: 5004
Number of extensions: 17970
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)