Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_L22
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 32 0.54
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 32 0.71
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 30 2.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 3.8
10_08_0214 - 15915156-15915713 29 5.0
09_04_0506 - 18188785-18190599 29 5.0
12_01_0841 - 7873458-7874225 29 6.6
06_03_0212 + 17986660-17986986 29 6.6
03_01_0023 + 198414-198968 29 6.6
03_06_0088 - 31562596-31563096 28 8.7
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 32.3 bits (70), Expect = 0.54
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 556 PPKPXXXXXXGNTPRAPNXX*XXPVSXXHLSDXCPPXLPPXPXXGXEPPCXPP 714
PP+P P+AP P + PP +PP P G +PP PP
Sbjct: 264 PPRPPPPQVPPPPPQAP------PPPPPNAPMGMPPRIPPPPVGGTQPPPPPP 310
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 31.9 bits (69), Expect = 0.71
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = -1
Query: 716 RGGXHGGSXPXXGXGGRXGGQXSERXXXETGXCQXXLGA-RGVXPXGGXGFGFGG 555
RGG GG G GG GG G G RG P GG G+G GG
Sbjct: 16 RGGGRGGGG-GDGRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGGGRGYGGGG 69
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -1
Query: 713 GGXHG-GSXPXXGXGG-RXGGQXSERXXXETGXCQXXLGARGVXPXGG--XGFGFGG 555
GG G G P G GG R GG ++ + G + G RG P G G G GG
Sbjct: 18 GGRDGRGRGPAGGRGGGRGGGHPQQQQQQQPGYGRGDGGGRGPAPAAGGVVGRGTGG 74
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/71 (26%), Positives = 21/71 (29%)
Frame = +1
Query: 502 PLKPPXXGWSSXRXXXRXPPKPXXXXXXGNTPRAPNXX*XXPVSXXHLSDXCPPXLPPXP 681
P PP S+ PP P P P P+ PP PP P
Sbjct: 569 PPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLP 628
Query: 682 XXGXEPPCXPP 714
PP PP
Sbjct: 629 NHSVLPPPPPP 639
>10_08_0214 - 15915156-15915713
Length = 185
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 713 GGXHGGSXPXXGXGGRXGGQXSERXXXE-TGXCQXXLGARGVXPXGGXGFGFGG 555
GG +G G GG GG S + +G GA G GG G G GG
Sbjct: 70 GGGYGRGGGGGGGGGEGGGSGSGYGSGQGSGYGAGVGGAGGYGSGGGGGGGQGG 123
>09_04_0506 - 18188785-18190599
Length = 604
Score = 29.1 bits (62), Expect = 5.0
Identities = 25/73 (34%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Frame = -1
Query: 716 RGGXHGGSXPXXGXGGRXGGQXSERXXXETGXCQXXLGARGVXPXGGXG-FGFGGXRXXX 540
RGG GG P G GG GG G Q + P GG G G GG
Sbjct: 313 RGG--GGGGPGGGGGGGGGGNWGRGGGGMGGRGQAGNMRNRMGPVGGRGLMGNGGMVAPP 370
Query: 539 RXXDHPXXGGFRG 501
HP GG G
Sbjct: 371 PPMLHP--GGMLG 381
>12_01_0841 - 7873458-7874225
Length = 255
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -1
Query: 713 GGXHGGSXPXXGXGGRXGGQXSERXXXETGXCQXXLGARGVXPXGGXGFGFGG 555
GG GG G GG GGQ G G GG G G GG
Sbjct: 175 GGASGGGYGQGGGGGGGGGQGGGNGSGYGSGYGSGYGQGGGVHAGGYGQGGGG 227
>06_03_0212 + 17986660-17986986
Length = 108
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 728 AWXXRGGXHGGSXPXXGXGGRXGG 657
AW RGG GG G GG GG
Sbjct: 70 AWSGRGGGDGGGGGDGGGGGDGGG 93
>03_01_0023 + 198414-198968
Length = 184
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/53 (37%), Positives = 20/53 (37%)
Frame = -1
Query: 713 GGXHGGSXPXXGXGGRXGGQXSERXXXETGXCQXXLGARGVXPXGGXGFGFGG 555
GG GG G GGR GG S G G G GG G G GG
Sbjct: 37 GGGGGGGGGGGGGGGRGGGGGSGGGSGGGGGSGG--GGSGGGGSGGGGSGGGG 87
>03_06_0088 - 31562596-31563096
Length = 166
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/49 (40%), Positives = 20/49 (40%)
Frame = -1
Query: 701 GGSXPXXGXGGRXGGQXSERXXXETGXCQXXLGARGVXPXGGXGFGFGG 555
GG G GGR GGQ R G GARG GG FG G
Sbjct: 64 GGRLGTRGAGGRDGGQLGARGASGGG---GRFGARGA-AGGGGRFGARG 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,664,475
Number of Sequences: 37544
Number of extensions: 215443
Number of successful extensions: 1126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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