Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_L18
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.68 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   8.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = +1

Query: 703  PPXXPXAXXPXXXXXXXPXXXPPXXPPPAXAXXXPXSXXXAXXPP 837
            PP  P +  P       P   P   PPP  A   P     A  PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +1

Query: 697  PXPPXXPXAXXPXXXXXXXPXXXPPXXPPPAXAXXXP 807
            P PP  P +  P       P   P   PPP  A   P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 19/77 (24%), Positives = 21/77 (27%)
 Frame = +1

Query: 667 AXPPXXPXXPPXPPXXPXAXXPXXXXXXXPXXXPPXXPPPAXAXXXPXSXXXAXXPPXXX 846
           A  P     PP PP  P +  P           PP  PP       P +       P   
Sbjct: 221 AGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSM 280

Query: 847 XPXXAXXXXXAPPXXXP 897
            P  A      PP   P
Sbjct: 281 NP--AINSTSKPPLPPP 295



 Score = 29.1 bits (62), Expect = 0.90
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +3

Query: 633 PPXXPXGPXXXRXPPXXPXXXPXPXPXAPRXXPXXXXXXPPPXXXPXXPP 782
           PP  P        PP  P   P   P AP   P      P P   P  PP
Sbjct: 420 PPSLPPSAPPS-LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
 Frame = +1

Query: 673 PPXXPXXPPXPPXXPXA-XXPXXXXXXXPXXXPPXXPPPAXA 795
           P   P  PP PP  P A   P       P       PPPA A
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA 481


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 322 LRSLISNLSNTCDLTPLPEWSCEQSAW 242
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,265,208
Number of Sequences: 5004
Number of extensions: 12601
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)