Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_L16
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    34   0.029
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   4.3  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.3  
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    26   7.6  

>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 33.9 bits (74), Expect = 0.029
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 183 KANPPLQYVTWTKD-KRLLEPYQTKDIVIMNNGSLLFTRVNQNHQGRYTCTPYNAQGK 13
           KA   +  V WT D +RLL    T +  + N  +  F  +NQ+H     C  ++  G+
Sbjct: 79  KARHVINVVRWTPDGRRLLTGSSTGEFTLWNGLTFNFELINQSHDYAVRCAEWSTDGR 136


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 351 QGLITRAPSLRMVTLVSKAATSATGAPSRNHFTVT 455
           + +I R PS+  +  V+   +  TG  + NH TVT
Sbjct: 308 RAIIRRLPSVETLGSVNVICSDKTGTLTMNHMTVT 342


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 132 LEPYQTKDIVIMNNGSLLFTRVNQNHQ 52
           +EP +++ IV  N  +L+F  VNQN Q
Sbjct: 67  IEPNKSQTIVKKNPDNLIFVAVNQNVQ 93


>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 223 FALPFGWSGSMLHKSQSTSAVRYLDKRQEIIGALSNEGHCYNEQR 89
           F  PF W    LHK Q      ++D   E+ G+L++    Y  QR
Sbjct: 176 FKYPFPWVPGKLHKRQG-----FIDINFEVSGSLASGTVHYQSQR 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,032
Number of Sequences: 5004
Number of extensions: 70417
Number of successful extensions: 196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)