Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_L14
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090...    29   3.6  
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    29   6.2  

>09_06_0107 +
           20907560-20908491,20908511-20908625,20908967-20909058,
           20909293-20909556,20910714-20911494
          Length = 727

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = +3

Query: 603 PWXPXXXPXXXPXXPXXXSXPPPLXPXXXXPAXASHAGSKLPSXXXXPXXPP 758
           P  P   P   P  P     PPPL P     +  +++ S   S    P  PP
Sbjct: 73  PPPPQTPPSPPPPPPPPPPPPPPLSPTPTTTSWTTNSSSISASPILPPPPPP 124


>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 636 PXXPXXXSXPPPLXPXXXXPAXASHAGSKLPSXXXXPXXPPXP 764
           P  P     PPP  P         H  SK P     P  PP P
Sbjct: 27  PPPPPPSDPPPPPPPHHHHHHRRRHRHSKKPKPQPQPQPPPPP 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,400,806
Number of Sequences: 37544
Number of extensions: 147649
Number of successful extensions: 567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)