Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_L11
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    28   9.6  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    28   9.6  

>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 430 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 251
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 250 SH--SKRETRRRSP 215
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 668 VTTRDNWLVAAKRS*RRCFLILRCRPFLSLRSKIRQALDCSPIKREREL 522
           +T +   L   K   RRC L+LR +  L +++ I + L+CS   + R L
Sbjct: 89  LTDQQEELDILKADTRRCSLVLRTQTSLRVKTIIDKLLNCSGRDQRRAL 137


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 668 VTTRDNWLVAAKRS*RRCFLILRCRPFLSLRSKIRQALDCSPIKREREL 522
           +T +   L   K   RRC L+LR +  L +++ I + L+CS   + R L
Sbjct: 89  LTDQQEELDILKADTRRCSLVLRTQTSLRVKTIIDKLLNCSGRDQRRAL 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,502,357
Number of Sequences: 27780
Number of extensions: 396020
Number of successful extensions: 1145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)