Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_L08
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...   189   4e-49
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...   189   4e-49
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...   189   4e-49
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    71   2e-13
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    31   0.17 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   3.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.0  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   8.7  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score =  189 bits (460), Expect = 4e-49
 Identities = 90/133 (67%), Positives = 104/133 (78%), Gaps = 1/133 (0%)
 Frame = -3

Query: 736 FNVKNVSVKXCV-GLCCW*LXKQPT*GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 560
           FNVKNVSVK    G  C      P  G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367

Query: 559 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 380
           CKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDM
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427

Query: 379 RQTVAVGVIQGCQ 341
           RQTVAVGVI+  +
Sbjct: 428 RQTVAVGVIKAVE 440


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score =  189 bits (460), Expect = 4e-49
 Identities = 90/133 (67%), Positives = 104/133 (78%), Gaps = 1/133 (0%)
 Frame = -3

Query: 736 FNVKNVSVKXCV-GLCCW*LXKQPT*GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 560
           FNVKNVSVK    G  C      P  G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367

Query: 559 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 380
           CKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDM
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427

Query: 379 RQTVAVGVIQGCQ 341
           RQTVAVGVI+  +
Sbjct: 428 RQTVAVGVIKAVE 440


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score =  189 bits (460), Expect = 4e-49
 Identities = 90/133 (67%), Positives = 104/133 (78%), Gaps = 1/133 (0%)
 Frame = -3

Query: 736 FNVKNVSVKXCV-GLCCW*LXKQPT*GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 560
           FNVKNVSVK    G  C      P  G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIA
Sbjct: 308 FNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIA 367

Query: 559 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 380
           CKFAE+ EK+DRR+GK  E +PK +KSGDA I  +VPSKP+CVE+F ++ PLGRFAVRDM
Sbjct: 368 CKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDM 427

Query: 379 RQTVAVGVIQGCQ 341
           RQTVAVGVI+  +
Sbjct: 428 RQTVAVGVIKAVE 440


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 36/108 (33%), Positives = 57/108 (52%)
 Frame = -3

Query: 676 KQPT*GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 497
           K P      F AQ+ +L  P  ++ GY+ V+  HTA     FA++  K+D+ T + ++  
Sbjct: 551 KNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKP 609

Query: 496 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 353
           P     G   I  L    P+C+E F+++  +GRF +RD   TVAVG +
Sbjct: 610 PMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKV 657


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 30/109 (27%), Positives = 46/109 (42%)
 Frame = -3

Query: 676 KQPT*GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVN 497
           + P      F A++   +  G I +G T VL     H+      +  K+     K +  +
Sbjct: 489 ENPVRRVRSFVAEIQTFDIHGPILSGSTLVL-----HLGRTVTSVSLKIVTVNNKRSR-H 542

Query: 496 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIQ 350
             S K     I  L    PLC+   +E P LGRF +R    TVA G+++
Sbjct: 543 IASRKRALVRISFLDGLFPLCLA--EECPALGRFILRRSGDTVAAGIVK 589


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 650  FYSSSHCA*PSWSNLKRLHTSFGLPHC 570
            FY S H    + SN+  +H  FGL  C
Sbjct: 1082 FYKSDHLDPNACSNVSPIHREFGLQSC 1108


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 24/84 (28%), Positives = 40/84 (47%)
 Frame = +3

Query: 303 SFSDPATTSLPXS*QPWMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASPD 482
           S+SDPAT+ LP S   + +PT++    S T       +S  D +         + +    
Sbjct: 105 SYSDPATSQLPSS-TSFFSPTSSEYTPSSTE-----SSSLLDPSSVSSAILPSSTSVEVS 158

Query: 483 LMDFGLTSVDLPVRRSTFSLISAN 554
           +    L+S D P+  STFS +S++
Sbjct: 159 ISSSSLSSSD-PLTSSTFSSLSSS 181


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 465 MAASPDLMDFGLTSVDLPVRRSTFS 539
           ++ +PDL D  L+SVD P++ +T S
Sbjct: 27  LSVAPDLADVLLSSVDQPLKVNTCS 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,071
Number of Sequences: 5004
Number of extensions: 57900
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)