Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_L08
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   216   2e-58
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   213   1e-57
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   155   4e-40
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.0  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   3.0  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   3.0  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   7.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   7.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  216 bits (527), Expect = 2e-58
 Identities = 106/130 (81%), Positives = 112/130 (86%), Gaps = 1/130 (0%)
 Frame = -3

Query: 736 FNVKNVSVKXCV-GLCCW*LXKQPT*GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 560
           FNVKN+SVK    G        QP  GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369

Query: 559 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 380
           CKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDM
Sbjct: 370 CKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDM 429

Query: 379 RQTVAVGVIQ 350
           RQTVAVGVI+
Sbjct: 430 RQTVAVGVIK 439


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  213 bits (520), Expect = 1e-57
 Identities = 105/130 (80%), Positives = 110/130 (84%), Gaps = 1/130 (0%)
 Frame = -3

Query: 736 FNVKNVSVKXCV-GLCCW*LXKQPT*GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 560
           FNVKNVSVK    G         P  GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369

Query: 559 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 380
           CKFA+IKEK DRR GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDM
Sbjct: 370 CKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDM 429

Query: 379 RQTVAVGVIQ 350
           RQTVAVGVI+
Sbjct: 430 RQTVAVGVIK 439


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  155 bits (376), Expect = 4e-40
 Identities = 78/99 (78%), Positives = 81/99 (81%), Gaps = 1/99 (1%)
 Frame = -3

Query: 736 FNVKNVSVKXCV-GLCCW*LXKQPT*GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 560
           FNVKN+SVK    G        QP  GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA
Sbjct: 21  FNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 80

Query: 559 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 443
           CKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 81  CKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 229 KYRSCMKNCAVNSSSYFLPLVAFS 300
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 229 KYRSCMKNCAVNSSSYFLPLVAFS 300
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 229 KYRSCMKNCAVNSSSYFLPLVAFS 300
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 190 CSPFFLRNTFR*MKYRSCMKN 252
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 338 KLTALDDSDSNCLPHVTDSKTT 403
           KL+ ++D+D N   H  D+K++
Sbjct: 562 KLSTIEDADKNQCRHYLDAKSS 583


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 499 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR-QTVAVGVIQGCQL 338
           NP+    G   +V L PS P C    ++ P LG       +    ++GV  GC L
Sbjct: 66  NPEHKPPGPKDLVYLEPSPPFC----EKNPKLGILGTHGRQCNDTSIGV-DGCDL 115


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 499 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR-QTVAVGVIQGCQL 338
           NP+    G   +V L PS P C    ++ P LG       +    ++GV  GC L
Sbjct: 67  NPEHKPPGPKDLVYLEPSPPFC----EKNPKLGILGTHGRQCNDTSIGV-DGCDL 116


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 602 RLHTSFGLPHCPHC 561
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -3

Query: 736 FNVKNVSVK 710
           FNVKNVSVK
Sbjct: 253 FNVKNVSVK 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,483
Number of Sequences: 438
Number of extensions: 3903
Number of successful extensions: 25
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)