Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_L05
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 35 0.069
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798 33 0.21
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205... 33 0.21
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 31 1.1
05_07_0208 + 28412736-28415348 30 2.0
01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394 30 2.0
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 29 4.5
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 29 4.5
09_06_0195 - 21477817-21478119,21478216-21478366,21478459-214786... 29 6.0
03_02_0465 - 8688454-8689899 29 6.0
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 28 7.9
01_06_0475 + 29610268-29610711 28 7.9
>04_04_1263 -
32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 35.1 bits (77), Expect = 0.069
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 557 RRPVR-SCLAMRRCSGSAGGCRFSGEVRACACLTSVRGWLPQCESTSCKXGGXVXCXXGG 733
+RP SC C G G C F+G V AC CL P + C+ + C GG
Sbjct: 274 QRPAAGSCEVYGSC-GPFGYCDFTGAVPACRCLDGFEPVDPSISQSGCRRKEELRCGEGG 332
>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
Length = 333
Score = 33.5 bits (73), Expect = 0.21
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -3
Query: 553 LTGHDDFRCVNFSSPRK-LACFLVCLL--AGARSHRTCSVIGTTSIKRHDTRTLSSWPPV 383
+ G D + +FSS + C ++C G + ++ S+ TT+ HDT T +S PP+
Sbjct: 142 MEGVHDQQASSFSSKEDWVLCRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPL 201
Query: 382 TTFPILRTEWKAVDVAQNTSS 320
P++ T + + NTSS
Sbjct: 202 P--PLMDTTLAQLQASMNTSS 220
>01_01_0250 +
2052599-2053358,2053581-2053604,2054813-2054848,
2055047-2056284
Length = 685
Score = 33.5 bits (73), Expect = 0.21
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 10/114 (8%)
Frame = +2
Query: 404 GSRVVPLYRSGTNNTTRSMTSGSSKQANKKASKFPWGRKIDTSEVV---VTCKIRRPVRS 574
G++ V + NNT + +G A P D +++ + R P
Sbjct: 160 GAKAVVRLDTSYNNTAARVVAGGCDYAAVPVVGVPGASPTDYPQLLRGGYMLEWRAPAGD 219
Query: 575 CLAMRRCSGSAGGCRFSGEVRACACLTS-------VRGWLPQCESTSCKXGGXV 715
C+A C+ S G C + + A AC+ S + GWL + + K G V
Sbjct: 220 CMA---CNASGGQCGYDADTEAFACICSDGSSRPGICGWLELTKGNAKKSGNKV 270
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 31.1 bits (67), Expect = 1.1
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -1
Query: 306 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARL 127
S NG R P SS +L +G L+L S F P SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGGMSVSLAS 256
Query: 126 LLGFVLATS-SGLSPVSSPTKVRV 58
G V+ +GL +SP ++ V
Sbjct: 257 PDGRVVGGGVAGLLVAASPVQIVV 280
>05_07_0208 + 28412736-28415348
Length = 870
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Frame = -1
Query: 735 PPPXXXFTXPPXLHDVLSH*GSQPRTLVK---HAQARTSPENLHPPAEPEHRRIA 580
PPP PP LH + SH QP L H R P + A P R A
Sbjct: 3 PPPARTHPNPPLLHLLASHRAPQPLPLTPAHGHLPPRKRPRGVGSAAAPPPPRAA 57
>01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394
Length = 629
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 563 PVRSCLAMRRCSGSAGGCRFSGEVRACACLTSVRGWLP 676
PV C A C+ S G CR+ A ACL S G P
Sbjct: 210 PVGDCNA---CTASGGRCRYDASTSAFACLCSDGGMRP 244
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 246 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 76
L TKG +T+ H P+ FSP S G E+ L + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Frame = -2
Query: 734 HHPX-----YXLRXHLFYTMYSHTEEANREHLSSTHKHALHRKTCIRQRNPNTAASPDTN 570
HHP Y ++ H E +R H S HKH L R + + P D++
Sbjct: 721 HHPESDEENYDSEESYKHSRKKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHRHRDSS 778
Query: 569 APDVLSYRSRR 537
+ D +RS +
Sbjct: 779 SEDEHEHRSSK 789
>09_06_0195 -
21477817-21478119,21478216-21478366,21478459-21478696,
21478786-21478996,21479162-21479361,21479453-21479545,
21479722-21481093
Length = 855
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/62 (27%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Frame = +2
Query: 563 PVRSCLAMRRCSGSAGGCRFSGEVRACACL-----TSVRGWLPQCESTSCKXGGXVXCXX 727
P C C G G C +G V C CL S W S C+ + C
Sbjct: 297 PAMDCFTYEHC-GPGGSCDATGAVPTCKCLDGFEPVSAEEWNSGLFSRGCRRKEALRCGG 355
Query: 728 GG 733
G
Sbjct: 356 DG 357
>03_02_0465 - 8688454-8689899
Length = 481
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 662 EHLSSTHKHALHRKTCIRQRNPNTAASPDTNAPDVLSY---RSRRLQMCQFFFPTE 504
EHL++ H LHR T +RQ P A + + +P + Y + R + Q+ PT+
Sbjct: 142 EHLTTFRTH-LHRITSLRQLPPGLAVAGSSLSPGLHVYDLLKGRHVASVQWSDPTD 196
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -3
Query: 502 LACFLVCLLAGARSHRTCSVIGTTSIKR----HDTRTLSSWPPVTTFPILRTEWKAVDVA 335
L+C ++ LLAGA H ++ T +KR H+ T++ P T + + ++V
Sbjct: 13 LSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVREGDTVVINVV 72
Query: 334 QNTSSRILL 308
+ + +
Sbjct: 73 NHAQYNVTI 81
>01_06_0475 + 29610268-29610711
Length = 147
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 270 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 181
SP SS+P S+++ TL HSP S SPD
Sbjct: 54 SPMSSSPP---SRSSTRATLTHSPSSASPD 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,531,192
Number of Sequences: 37544
Number of extensions: 468145
Number of successful extensions: 1428
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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