Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_L04
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    31   1.5  
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100...    29   3.5  
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597...    28   8.1  
01_06_0475 + 29610268-29610711                                         28   8.1  

>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -2

Query: 524 SEPPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMES 345
           S PP   +   L     +  +S Y +S SM  F  +AR   P++ ++ NY+         
Sbjct: 33  SSPPTRDKFSRLTTRTTIFQVSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANL 92

Query: 344 SRRRPK-HVISDP 309
            RRR +  + SDP
Sbjct: 93  KRRRIECFLTSDP 105


>08_01_0125 +
           1001397-1001865,1002743-1002810,1003359-1003490,
           1003649-1003810,1003973-1004260
          Length = 372

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -1

Query: 303 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGG 145
           S NG       R P SS  +L  +G    L+L  S   F P   SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGG 249


>03_02_0155 -
           5974118-5974173,5974242-5974314,5974393-5974500,
           5975189-5976914,5977065-5977620,5978008-5978485
          Length = 998

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 838 FAQSXMYXQPIPGXPEGQIXRRHPRQ*DDIPPPHQ 734
           F QS M   P P  P  +    HP     + PPHQ
Sbjct: 586 FLQSQMQTYPAPDLPHPRPLDFHPHTLQPVVPPHQ 620


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 267 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 178
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,082,281
Number of Sequences: 37544
Number of extensions: 475839
Number of successful extensions: 1109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)