Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP08_T7_L04
(843 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 38 0.007
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 38 0.009
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 37 0.016
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 33 0.19
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 7.2
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 7.2
U28731-9|AAA68301.2| 437|Caenorhabditis elegans Hypothetical pr... 28 9.5
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 28 9.5
AC006701-4|AAK68403.2| 606|Caenorhabditis elegans Hypothetical ... 28 9.5
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = -1
Query: 786 KXLGVTLDSRMTFRPHIKTVRXRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTY 607
+ LG + ++ F H K A F L ++ +K + + LYKT IRP + Y
Sbjct: 148 RDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKTFIRPRLEY 204
Query: 606 ASVVFAHAARIHLKSFQIIQSRFCR 532
+VV + + K+ + +Q+ F R
Sbjct: 205 GTVVSSPTKKSDEKAIESVQNAFTR 229
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = -1
Query: 786 KXLGVTLDSRMTFRPHIKTVRXRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTY 607
+ LG+ DS++TF+PHIK + + L R ++ + L+KT I P++ Y
Sbjct: 196 RDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEY 252
Query: 606 ASVVFA 589
S V++
Sbjct: 253 GSAVYS 258
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 37.1 bits (82), Expect = 0.016
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = -1
Query: 786 KXLGVTLDSRMTFRPHIKTVRXRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTY 607
+ LG + ++ F H + A F L ++ +K + + LYKT IRP + Y
Sbjct: 178 RDLGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---ILLYKTFIRPRLEY 234
Query: 606 ASVVFAHAARIHLKSFQIIQSRFCR 532
+VV + + K+ + +Q+ F R
Sbjct: 235 GTVVSSPTKKSDEKTIESVQNAFTR 259
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 33.5 bits (73), Expect = 0.19
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = -1
Query: 789 VKXLGVTLDSRMTFRPHIKTVRXRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMT 610
V+ LG+ D ++ F HI V A R ++ S S + LYKT + P+M
Sbjct: 976 VRDLGLITDCKLKFEHHIVKVSCLAML---RSKQILKAFSSNSPKFYAHLYKTYVAPIMN 1032
Query: 609 YASVVFA 589
Y S V+A
Sbjct: 1033 YCSEVYA 1039
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 488 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 372
H D + E+ ++ + S RH + E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 488 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 372
H D + E+ ++ + S RH + E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>U28731-9|AAA68301.2| 437|Caenorhabditis elegans Hypothetical
protein F12A10.8 protein.
Length = 437
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/63 (20%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -2
Query: 524 SEPPWFVRNVDLHDDLDLESISKYLQSASM-RHFDKAARHENPLIVAAGNYIPDPADRME 348
S+P + N D L+L+S + +++ + ++ D++ +H+ ++ + G+Y D +
Sbjct: 316 SKPRFDEANFHNEDPLNLDSQEDFFETSYLPKNADESKKHQKSMLPSFGDYTTKSDDERQ 375
Query: 347 SSR 339
+R
Sbjct: 376 KNR 378
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 365 PADRMESSRRRPKHVISDPPDP 300
P ++RRR +HV+S PP P
Sbjct: 4 PVVEFTTARRRKRHVVSTPPPP 25
>AC006701-4|AAK68403.2| 606|Caenorhabditis elegans Hypothetical
protein Y104H12D.3 protein.
Length = 606
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 303 IRRIRDDVFRATSTAFHSVRRIGNVVTGGHDERVLVSC 416
+R++ ++ + T FH + VV GG E ++++C
Sbjct: 176 VRKMEAEILKMTCAMFHGGKDSCGVVAGGGTEALMLAC 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,596,659
Number of Sequences: 27780
Number of extensions: 360869
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -