Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K23
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    28   1.6  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    27   4.9  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   4.9  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   8.6  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 651 NFXPFQDSPSMTSLYCSLIVPAE--AAYGVPS-LFPDLYSYTIK 529
           +F P   SP +TSL    I+P     AYG  S +  +LYS+++K
Sbjct: 605 SFSPCYFSPHLTSLSADYIIPLSDLVAYGDGSRIENELYSFSVK 648


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 402 LESFVSVHSLLITRVPQPPPSGEHVFLTPPA---SLLPNPEGLELP 274
           +E+F+ +++ L++ VP+P      VF TP     S LP+   LE P
Sbjct: 6   IENFIYLNNTLLSEVPEP----NSVFYTPKCFSNSKLPHQSDLEEP 47


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 450 RRSGISSGDLHLSVTLLESFVSVHSLLITRVPQPPPSGEHVFLTPPASLLPN 295
           +RS     D+ +  T  ++++    +L  + P+ P   +HV L PP S   N
Sbjct: 77  QRSKWEKSDVKVRQTKSKNYIFTSVVLAKKDPKNPSILDHVSLIPPKSYYEN 128


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -2

Query: 420 HLSVTLLESFVSVHSLLITRVPQPPPSGEHVFLTPPASLLPNPEGLELP 274
           H+ +  + +F +   L++++  QP P  E +  T   + +P   GLE+P
Sbjct: 684 HIDLHKIGAFQATQILIVSK--QPSPEAEELEDTFREAAIPTFRGLEIP 730


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,154
Number of Sequences: 5004
Number of extensions: 60509
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)