Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K23
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    34   0.18 
05_03_0258 - 11153709-11156090                                         26   3.4  
12_01_1017 - 10348198-10348326,10348412-10348532,10348746-103492...    29   5.2  
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    29   5.2  
02_05_1277 - 35408097-35409080                                         29   6.8  
04_04_0344 - 24536516-24537323,24537449-24537567,24539044-245394...    28   9.0  
03_06_0462 + 34113877-34114463,34117294-34117466,34118049-341182...    28   9.0  

>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = -2

Query: 483 YTQPLRSLDW--LRR---SGISSGDLHLSVTLLESFVSVH--SLLITRVPQPPPSGEHVF 325
           Y Q +RSL+W  LRR    G     L + V ++  FV +      +T+V  PPPSG H  
Sbjct: 339 YRQYMRSLEWTYLRRYFQGGSHKERLSIDVLIIHPFVDLFCGGNPVTKVDGPPPSGRHNL 398

Query: 324 LT 319
            T
Sbjct: 399 AT 400


>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 25.8 bits (54), Expect(2) = 3.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 366 TRVPQPPPSGEHVFLTPPASLL 301
           TR P P P+  H FL+P A  L
Sbjct: 64  TRRPHPTPTPPHSFLSPAAQSL 85



 Score = 22.2 bits (45), Expect(2) = 3.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 381 HSLLITRVPQPPPS 340
           H++L+   P PPPS
Sbjct: 26  HTVLLPATPPPPPS 39


>12_01_1017 -
           10348198-10348326,10348412-10348532,10348746-10349275,
           10349318-10349433,10349672-10349990,10350019-10350106,
           10350194-10350639
          Length = 582

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 414 IDEGRLMKYLSGGANPKNGEVECXCR*HFLRECTPADHL 530
           I+E  L+KY+          + C CR    REC P +H+
Sbjct: 305 IEEDNLVKYVISMKGDSKMSLNCPCR-KMDRECLPCEHM 342


>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 299 LIRRDWNCRSNHDSCQXEVYNSLFTYVRAV 210
           ++  +WN RSNHD C  E+ N L   V A+
Sbjct: 190 ILMNEWN-RSNHDCCHSELENILEVQVYAM 218


>02_05_1277 - 35408097-35409080
          Length = 327

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 420 HLSVTLLESFVSVHSLLITRVPQPPPSGEHVFLTPPASLLPNPEGLELPIKS 265
           H  + L +    V S   T  P PPP  +   L  PA   P P+   + +KS
Sbjct: 41  HCLILLAQGAAVVDSKPSTPAPPPPPPAQPPVLAAPAPAPPPPQPPVVVVKS 92


>04_04_0344 -
           24536516-24537323,24537449-24537567,24539044-24539484,
           24540291-24540508,24540641-24540728
          Length = 557

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
 Frame = -3

Query: 404 YLNPSFPSIPF*SLEFLNLPLPANMYF*--LLPLPCFLIRRDWNCRSNHDSCQXEVYNSL 231
           Y+  S   + F  LEFL L L A   +   L P PC +     NC   H      ++  L
Sbjct: 86  YITRSRTILLFGPLEFLALGLLALQAYLPSLHPPPCNIEAELSNCEEVHGFNTVILHIGL 145

Query: 230 FTYVRAVRTLRVTDPS-GFVRTQRQKPEHSWVQSS 129
           +T+  +   +R   PS G  +   + P  S  QSS
Sbjct: 146 YTWAFSEGCIRACTPSLGADQFDHEDPSESRQQSS 180


>03_06_0462 +
           34113877-34114463,34117294-34117466,34118049-34118233,
           34118865-34118957
          Length = 345

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 372 LITRVPQPPPSGEHVFLTPP-ASLLPNPEG 286
           L+ R P PPP G    L PP A L+ +P G
Sbjct: 19  LLGRAPMPPPPGPRDELPPPSAVLVHHPRG 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,002,551
Number of Sequences: 37544
Number of extensions: 456359
Number of successful extensions: 1354
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)