Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP08_T7_K23
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29381-9|AAA68749.2|  503|Caenorhabditis elegans Prion-like-(q/n...    29   4.6  
U29381-4|AAM98023.1|  511|Caenorhabditis elegans Prion-like-(q/n...    29   4.6  
Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical pr...    29   6.1  
U39996-3|AAA81089.1|  621|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U39996-2|AAU20848.1|  607|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL008868-1|CAA15515.2|  213|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U29381-9|AAA68749.2|  503|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 35,
           isoform a protein.
          Length = 503

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 351 PPPSGEHVFLTPPASLLPNPEGLELPIKS 265
           PP S E   ++P ASL P  +G  LPI+S
Sbjct: 452 PPASSEENVISPDASLEPINDGKFLPIRS 480


>U29381-4|AAM98023.1|  511|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 35,
           isoform b protein.
          Length = 511

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 351 PPPSGEHVFLTPPASLLPNPEGLELPIKS 265
           PP S E   ++P ASL P  +G  LPI+S
Sbjct: 460 PPASSEENVISPDASLEPINDGKFLPIRS 488


>Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical
           protein F10F2.5 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 188 PSGFVRTQRQKPEHSWVQSSAWDNLANF 105
           P GFV   R+    +W     WD+ AN+
Sbjct: 368 PDGFVEYYRKNEGKTWCHKYVWDDTANY 395


>U39996-3|AAA81089.1|  621|Caenorhabditis elegans Hypothetical
           protein C56E6.3a protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 432 SGDLHLSVTLLESFVSVHSLLITRVPQPPPSGEHVFLTPPASLLPNPEGLEL 277
           S   H S+   E  V  HS+++   P PPP      L   A + P    L++
Sbjct: 2   SSSRHFSIPYDEDVV--HSVILENTPSPPPKPPRGILRKEAPMKPQRSALKI 51


>U39996-2|AAU20848.1|  607|Caenorhabditis elegans Hypothetical
           protein C56E6.3b protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 432 SGDLHLSVTLLESFVSVHSLLITRVPQPPPSGEHVFLTPPASLLPNPEGLEL 277
           S   H S+   E  V  HS+++   P PPP      L   A + P    L++
Sbjct: 2   SSSRHFSIPYDEDVV--HSVILENTPSPPPKPPRGILRKEAPMKPQRSALKI 51


>AL008868-1|CAA15515.2|  213|Caenorhabditis elegans Hypothetical
           protein C53C7.3 protein.
          Length = 213

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 360 VPQPPPSGEHVFLTPPASLLPNPEGLEL 277
           VP PPPS  H+  +PP +  P P  + L
Sbjct: 98  VPTPPPSLSHMMRSPPINDEPLPHPIAL 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,952
Number of Sequences: 27780
Number of extensions: 349210
Number of successful extensions: 891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)